Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2273 ATGGCCCTCGCGAAAGAAATCATGGTTTCTTCTTTGATCGAGAGGTCTCCATTTGCTTCTTCATCACAATTGCTTCTTGGCCATAGTTTTCAGCACAAGCAGAGGCAGCTCTTGGTCAGCCCCTTTGCGGTTCCTTTGGAGAAGAACAGACGAGGAGTGAGGTTGAGTAAAGCTGCGAGGACCAAAACTGTGGCGGCTATCAGTGAGGATTTGGTCAAATCCTCTTCTTCTTCATCATCGTCTTTGTCTTCTTCTGTTTCTGTTGAGAAAGCAGTGACATTCAAGGTTAGAGCTGTAGTAACTGTTAGGAACAAGATCAAAGAGGATTTTAAGGAGACCCTTGTCAAGCATTTGGATGCCATCACTGACAGAATAGGCAGGAATGTCGTTTTGGAACTTGTCAGCACTGAGATTGACCCAAAAACGAAAGCCCCCAAGAAGAGCTATGAAGCTGTGCTAAAAGACTGGTCAAAGAAATTGAATGTGAAAGCAGAGAGAGTTAATTACACAGCAGAGTTCATGGTGGGCTCGGATTTTGGAGAACCAGGAGCTATCACTGTGACGAACAAACACCAGCAAGAGTTCTTCATGGAAAGCATAACCGTTGAAGGATTTGCTTGTGGTCCTGTTCATTTCCCCTGTAACTCCTGGGTTCAAGCCAGAAAAGATCATCCTGGAAAGAGGATATTCTTTGCCAACAAGCCATATCTACCCCACGAGACACCAGCTGGGCTAAGAATACTGAGAGAGAAAGAACTGAGGAATCTAAGAGGTGACGGCACAGGTATTAGGAAATTATCAGACAGAATATATGACTTTGCCACCTACAATGATCTGGGAAATCCTGATAAAGGCTCAGATCTTGCTAGACCAGTTCTTGGAGGCTCAGAGGAATATCCTTATCCAAGACGGTGTCGTACTGGCCGCCTCCCAACCGACACTGATATGAATGCAGAGAGCAGGGTGGAGAAACCGCTGCCGATGTATGTTCCAAGAGACGAACGATTTGAGGAATCGAAGCAGAACACATTCACGGTCAAGAGGTTGAAGGCAGTGCTTCATAACTTGATCCCTGGGCTGAAGGCAAGCCTCTCAGCTAATAACAATGACTTCAATGAATTCTCAGACGTTGATGGGCTGTACAGTGAGGGTCTGCTCATCAAACTGGGTCTGCAAGATGAAGTTCTCAAGAAAATCCCTTTGGTCCGCAAGATCCATGAATCAAGTCAAGGCCTTCTTAAGTACGACACTCCTAAGATCATTTCCAAGGACAAGTTTGCGTGGCTGCGAGATGACGAATTTGCCCGTCAAGCAATAGCAGGAATCAACCCTGTGAATATCGAGAAGCTCAAGGTTTTCCCACCTGTGAGCAAGCTTGACCCACAAGTTTATGGTCCTCAAGAGTCTGCCCTCGGAGAGGAGCACATTCTAGGTCAACTTAATGGCATGACCGTTCAACAGGCAATGGATGAAGATAAGCTGTTCATCATAGATTACCATGATATCTACCTTCCGTTTCTTGATGGGATCAATGGCCTTGATGGTCGAAAATCCTACGCTACTCGCACCATCTTCTTCTTGACACCCATGGGCACTCTCAAGCCGGTTGCTATAGAGCTCAGCCTGCCACCGGCCGGACCAAGTTCCCGGTCGAAACGCGTAGTCACGCCCCCCGTTGATGCCACCACCAACTGGATGTGGCAGCTTGCTAAGGCCCACGTTTGTTCCAATGACGCCGGTGTGCATCAGCTTGTCAACCATTGGCTACGGACACATGCGAGCATGGAGCCGTTTATATTGGCAGCACACAGGCAATTAAGTGCGATGCATCCTATATTCAAGCTGTTGGATCCTCACATGAGGTACACGCTGGAGATCAATGCCTTGGCTCGCCAGAGTCTCATCAATGCTGATGGAATCATTGAGTCTTGCTTCACTCCGGGACGCTACTGCATGGAAATCAGTTCTGCTGCTTACAAAAACTTCTGGCGCTTTGACATGGAGACCCTCCCCGCTGATCTCATTCGAAGGGGCATGGCGGTTCCTGACCCAACCCAACCTCATGGCTTGAGGCTGCTCATAGAAGACTACCCTTACGCGGCTGATGGACTGATGATTTGGTCCGCCATTCAAAACTGGGTCCGCGCCTATGTGAACCATTATTACTCGGACCCCGACCTCGTGGCCCAAGACAAGGAGCTTCAAGCTTGGTACTTTGAGTCCATCAATGTGGGTCATGCTGACCTCAGACACGAACCCTGGTGGCCTCCATTGAACACCAGTGACGACCTTGTCACCATACTCACAACCTTGATTTGGAACGCTTCTGCACAGCACGCTGCCCTCAACTTTGGGCAGTACCCTTATGGAGGGTACGTGCCCAATCGCCCTCCAATGATGAGAAGACTAATCCCTGAAGAGAGTGACCCGGAACATGCCAGTTTCCTTGCAGACCCTCAGAAATACTTCCTCAATGCCATGTCTAGCTTGTTGCAAGCTACCAAATATATGGCGGTGGTTGACACTCTGTCCACTCACTCTCCGGATGAGGAGTACCTCGGGGAGCGCCAGCAGCCATCGATCTGGACCGGCGACGCTGAGATGGTGGAGGCGTTCTATGGGTTCTCGAACAAGATCAGGCAGATAGAGAAGGAGATTGATAAGAGGAACTGTGACAGGACGCTGAGGAACCGATGTGGTGCTGGAGTGTTACCTTATGAGTTGCTTGCTCCTAGCTCAGAACATGGTGTTACATGTAGAGGAGTTCCAAATAGCGTGTCCAAAAAAAAAAAAAAAAAATCAAATAAGTGCCACAATTTACATGTTGTGAAAACAGGAGTGTAG 2844 0.4842 MALAKEIMVSSLIERSPFASSSQLLLGHSFQHKQRQLLVSPFAVPLEKNRRGVRLSKAARTKTVAAISEDLVKSSSSSSSSLSSSVSVEKAVTFKVRAVVTVRNKIKEDFKETLVKHLDAITDRIGRNVVLELVSTEIDPKTKAPKKSYEAVLKDWSKKLNVKAERVNYTAEFMVGSDFGEPGAITVTNKHQQEFFMESITVEGFACGPVHFPCNSWVQARKDHPGKRIFFANKPYLPHETPAGLRILREKELRNLRGDGTGIRKLSDRIYDFATYNDLGNPDKGSDLARPVLGGSEEYPYPRRCRTGRLPTDTDMNAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSANNNDFNEFSDVDGLYSEGLLIKLGLQDEVLKKIPLVRKIHESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGINPVNIEKLKVFPPVSKLDPQVYGPQESALGEEHILGQLNGMTVQQAMDEDKLFIIDYHDIYLPFLDGINGLDGRKSYATRTIFFLTPMGTLKPVAIELSLPPAGPSSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHASMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGIIESCFTPGRYCMEISSAAYKNFWRFDMETLPADLIRRGMAVPDPTQPHGLRLLIEDYPYAADGLMIWSAIQNWVRAYVNHYYSDPDLVAQDKELQAWYFESINVGHADLRHEPWWPPLNTSDDLVTILTTLIWNASAQHAALNFGQYPYGGYVPNRPPMMRRLIPEESDPEHASFLADPQKYFLNAMSSLLQATKYMAVVDTLSTHSPDEEYLGERQQPSIWTGDAEMVEAFYGFSNKIRQIEKEIDKRNCDRTLRNRCGAGVLPYELLAPSSEHGVTCRGVPNSVSKKKKKKSNKCHNLHVVKTGV 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2273 947 ProSiteProfiles PLAT domain profile. 110 232 IPR001024 GO:0005515
Prci12g2273 947 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 94 236 IPR036392 GO:0005515
Prci12g2273 947 ProSitePatterns Lipoxygenases iron-binding region signature 1. 582 596 IPR020833 GO:0016702|GO:0046872
Prci12g2273 947 SMART LH2_4 94 233 IPR001024 GO:0005515
Prci12g2273 947 Pfam PLAT/LH2 domain 166 231 IPR001024 GO:0005515
Prci12g2273 947 Gene3D PLAT/LH2 domain 80 236 - -
Prci12g2273 947 Gene3D - 237 339 - -
Prci12g2273 947 PANTHER LIPOXYGENASE 95 927 IPR000907 GO:0016702|GO:0034440|GO:0046872
Prci12g2273 947 CDD PLAT_LH2 94 233 IPR042057 -
Prci12g2273 947 SUPERFAMILY Lipoxigenase 237 927 IPR036226 -
Prci12g2273 947 FunFam Lipoxygenase 340 426 - -
Prci12g2273 947 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 235 928 IPR013819 GO:0016702|GO:0046872
Prci12g2273 947 FunFam Lipoxygenase 237 339 - -
Prci12g2273 947 Gene3D - 340 425 IPR027433 -
Prci12g2273 947 FunFam Lipoxygenase 561 927 - -
Prci12g2273 947 FunFam Lipoxygenase 427 559 - -
Prci12g2273 947 Pfam Lipoxygenase 245 911 IPR013819 GO:0016702|GO:0046872
Prci12g2273 947 Gene3D - 426 559 - -
Prci12g2273 947 PRINTS Lipoxygenase signature 564 581 IPR013819 GO:0016702|GO:0046872
Prci12g2273 947 PRINTS Lipoxygenase signature 602 622 IPR013819 GO:0016702|GO:0046872
Prci12g2273 947 PRINTS Lipoxygenase signature 582 599 IPR013819 GO:0016702|GO:0046872
Prci12g2273 947 ProSitePatterns Lipoxygenases iron-binding region signature 2. 609 619 IPR020834 GO:0016702|GO:0046872
Prci12g2273 947 Gene3D - 561 927 - -
Prci12g2273 947 PRINTS Plant lipoxygenase signature 202 220 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 519 543 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 300 319 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 368 389 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 413 429 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 267 283 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 452 471 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 840 854 IPR001246 GO:0016491
Prci12g2273 947 PRINTS Plant lipoxygenase signature 228 249 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2273 Prci-Chr12 40509459 40514590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2273 1 927 Acyl Lipid Metabolism Gene Families AT1G17420 72.591 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2273 K00454 - gmx:100793614 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2273 12 40509459 40514590 Prci12g2273 12 40509459 40514590 ECH