Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2211 ATGAAAATGGAAGCAACTGGCGATCGCTATGAAGGGAGAATGAGACTTCTATACGAGGCATCATACAGAGGGTGCGTTTCAACTTTGAACACCCTAATCCTGCAAGATCCTCTGATCTTGCACAGAATCAACTCGCGAACCATCTTTATGGAAACTCCCTTACACGTTTCAGCTTTGCTTGGCCACCTTGATTTCACAAAAGCCCTTCTTTCTCACAAACCCAAATTAGCCATTGAGTTGGACTCCTTCCAAAGCACACCTCTCCACTTAGCTTCTGCAGAAGGCCACATCGACATAGTGAAGCAGTTGTTGCAGTACTGTGATGATGCGTGCTTGGTTCTTGACCAAGAAGGGAGAATTCCCTTGCACTACGCTGTTATAAGAGGGAGATTTGAGGTTGTTGCAGAGCTTATTAGAGTAAAACCTGAGTCTTTGAGGATCCTTGACAAGGGTAAAACTATTTTCCACTTTTGTGTCACGTACAACCACTTGGAGATCCTCAAATCTTTGATTGAATTGGCTATTGGCGACACTTACGAGCTCCTCAATCAGAGAGACATGGATGGCAAGAACACCATTCTCCATTTGGCTGTTATGTCGAAGCAAGTTGAGACGGTGAGGTATCTCTTGTCAATTCCTGAAATAAGAGAACTGTCTAACATGGAGAACGGGATGGGTTATACGGTCCACGAAATTCTTGAGCAAATTCCGCAGGACTTGAAGAGCCTTGAAATACAAGTGATACTGATGAACTCTGGCATTAACAGTACCGAAAGGAGAGAAGTGAAGGATCGTGAAGGCCCAACAAGTACTAATGTCGGCCAAGGAATGAGACCTCGGAAGAAGTGGTGGAAAAATATTTTGAAGCACATGGGAAAATGGTTTAAGTATAACGGTGATTGGTTTAAGTCTTGTGGCTACTGTCATCTCGACCATAACCTTTCAAGCTGTAATCAATCCTCCAGGAGGCTTCATTCAACAAGTCAAGACATGCATGAAGATGATCAAGCATCTGACGTCAATATGTCCAAGGAACAGAAACGAAAATGCCATTGGTTGATGTGA 1065 0.4357 MKMEATGDRYEGRMRLLYEASYRGCVSTLNTLILQDPLILHRINSRTIFMETPLHVSALLGHLDFTKALLSHKPKLAIELDSFQSTPLHLASAEGHIDIVKQLLQYCDDACLVLDQEGRIPLHYAVIRGRFEVVAELIRVKPESLRILDKGKTIFHFCVTYNHLEILKSLIELAIGDTYELLNQRDMDGKNTILHLAVMSKQVETVRYLLSIPEIRELSNMENGMGYTVHEILEQIPQDLKSLEIQVILMNSGINSTERREVKDREGPTSTNVGQGMRPRKKWWKNILKHMGKWFKYNGDWFKSCGYCHLDHNLSSCNQSSRRLHSTSQDMHEDDQASDVNMSKEQKRKCHWLM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2211 354 Pfam Ankyrin repeats (3 copies) 54 138 IPR002110 GO:0005515
Prci12g2211 354 Pfam Ankyrin repeats (3 copies) 150 210 IPR002110 GO:0005515
Prci12g2211 354 Gene3D - 3 235 IPR036770 -
Prci12g2211 354 ProSiteProfiles Ankyrin repeat profile. 117 139 IPR002110 GO:0005515
Prci12g2211 354 ProSiteProfiles Ankyrin repeat region circular profile. 117 139 - -
Prci12g2211 354 MobiDBLite consensus disorder prediction 258 277 - -
Prci12g2211 354 SMART ANK_2a 150 180 IPR002110 GO:0005515
Prci12g2211 354 SMART ANK_2a 49 78 IPR002110 GO:0005515
Prci12g2211 354 SMART ANK_2a 189 217 IPR002110 GO:0005515
Prci12g2211 354 SMART ANK_2a 117 147 IPR002110 GO:0005515
Prci12g2211 354 SMART ANK_2a 83 112 IPR002110 GO:0005515
Prci12g2211 354 MobiDBLite consensus disorder prediction 325 347 - -
Prci12g2211 354 SUPERFAMILY Ankyrin repeat 12 230 IPR036770 -
Prci12g2211 354 ProSiteProfiles Ankyrin repeat profile. 83 105 IPR002110 GO:0005515
Prci12g2211 354 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 347 - -
Prci12g2211 354 ProSiteProfiles Ankyrin repeat region circular profile. 83 105 - -
Prci12g2211 354 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2211 Prci-Chr12 39720892 39725219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2211 17 233 Miscellaneous Gene Families AT4G10720 31.416 3.89e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2211 - - pcin:129289480 665.611