Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2185 ATGTTGAGTTCAGGAGTGAGTTTTGTGTCAGACATCTTTGGTGGCAACAAGGGAAAGATCAAAGGTACGGTGGTGTTGATGAGCAAGAAGGTTCTGGAGTTCAATAATTTGGACCTCAAAGCAGGAATCAACTTGGGTCTTGATGTTGCTACCTCTGTCTTCGATGGTCTTCATCAGATCATTGGTGGAGCTGTCTCTCTCCAACTCATTAATTCCACCAAGGCCGATCCTGGGAATGGTTTGGGGAAACTGGGAAAGACGGCGCCATTGGAAGGTTTTATTCGGACATTGCCAACGTTGTTGAATGGCCAAGCTGCATGCAGGGTTCATTTTGAGTACGATGATCAGTTTGGTCTGCCAGGAGCCTTTGTGATTAGGAACAATCTTCAAAATGAATTCTATCTTGTGAGCTTGACACTTGATGACATCCCAAATCACAGTTCCATCCACTTTGTTTGCAACTCTTGGATTTACCCTGATAGCAAATATCCAAGCGATCGCATCTTCTTCGCCAACAAGGCGTATCTGCCAAGCCAAACACCAGCGCCATTGCGGAAATACAGAGAACAAGAGCTGATTACTCTAAGAGGAGATGGATTCTCAGAATGCAAAGAGTGGGACAGAGTCTACGATTACGCTACTTATAACGATCTCGGCGATCCAGATTCCAACGCAAAGCTAGCTCGTCCAACTCTCGGAGGCTCCGCCGATTATCCTTATCCTCGCAGAGGAAGAACCAGCAGACAACCAAACAAATCTGATCCGAGCACCGAGAGCAGGCTTCTTTTTCTTGTTGAGAACTTCGACATCTATGTGCCACGAGATGAACGGTTTGGGCACACTAAGTTATCAGACTTCTTGGCGTATTTGCTAAAATCTGTGGCTCAAGATCTGAGGCCTTTACTGGAATCGGCATTTAGATTGTCAAATGAGTTCAAGGACTTTGATAACGTGCGTGATCTCTATAGTGGTGGCTTGAAGCTGCCACACGACTTGCTCAAGGATTTCAGTGAAAAGTTGCCCATACCGTTGCTCTCAGAACTCTTCCGAACTGATGGCGAACAGTTCCTCAGATTTCCAACTCCCTCAATCATCAAAGAAAATGTTTCTGGATGGATGACTGATGAAGAATTTGCAAGAGAGACGCTTGCTGGTGTGAATCCTTGCTTAATCCAATGTCTCCAAGAGTTTCCCCCAAAAAGCAAGCTAGATGCTAATCTCTACGGTGACCAAACCAGCAAAATTACCAAGGAACAATTGGAGAAAAGCATGAACGGATTCACAGTGGATGAGGCACTGTCCACCAGGAGACTGTTCATATTAGACCACCATGACGCATTCATGCTATATCTGAGACGTATAAACAGTGAAACTGGGAATAAGGCTTATGCCACAAGAACAGTCTTCTTCTTGAAAGACGATGGGACCTTGAAGCCATTGGCCATTGAATTAAGTTTACCTCATCCTGATGGAGACCAACATGGTGCTGTTAGTAAGGTGATTCTACCTGCAGACCAAGGTGTCGACGGCACCATTTGGCTCTTAGCGAAAGCTTATGTAACTGTCAACGACTCAGGCTTCCATCAACTTGTTAGCCACTGGCTAAATACTCATGCAGTTATTGAGCCATTCATCATAGCAACGAGCAGGCAATTGAGTGTGCTTCATCCCATTCACAAACTCCTGCATCCACATTTTCGTGACACGATGAACATAAACGCGCTGGCTCGACAAGCCTTGATCAATGCAAGTGGCATTATAGAGTTGTCATTCTTGCCTGGAAAATATGCCATGGAGATGTCTTCTAAGGTCTACAAGAACTGGGTTTTTCCTGACCAAGCCCTACCAGCTAACCTTATTAAAAGAGGAATGGCAGTTGAAGATCCAAGTTGCCCTCATGGGCTTCGTCTGGCAGTGGAGGACTACCCTTTTGCTGTGGATGGATTAGAGATATGGGATGCTATCAAGACATGGGTCCAAGATTATGTTTCTTGCTACTATGAGACTGATGAAACTGTTAAACAAGACTCCGAACTACAAGCTTGGTGGAAAGAACTTGTGGAAGTGGGTCATGGAGATTTGAAAGACAAGCCCTGGTGGCCTAAGATGCAGACACGCAAGGAACTTGTTGAATCTTGCACTATTGTCATATGGACTGCTTCAGCTCTCCATGCAGCTGTGAATTTTGGACAATATCCTTATGGAGGTTATATTCTGAACCGTCCAACACTGAGTAGAAGATTGATTCCTGAAGAAGGAAGTGAAGAATTTGAAGAGCTGAAGAACAACCCAGAAAAAGCTTTCTTGAAGACAATAACACCAAAGATTCAGACCCTCATTGACCTTTCGGTGATTGAGATATTGTCAAGGCACACTTCTGATGAGGTTTATCTGGGGACGAGAGACAGTCCTGACTGGACATCTGATGTGAAGCCATTGGAAGCTTTTAAGAAGTTTGGGAAGAAGCTTTCTGAGATTGAAGAAAAGCTTATTGCGAAGAACAAAGATGAGAAACTGAGGAACAGGGTTGGTGTGGTTAATGTACCTTACACTTTGCTTTATCCTACAAGTGAGGAAGGGCTAACAAGTAGGGGCATTCCAAACAGTATCTCCATTTGA 2619 0.4448 MLSSGVSFVSDIFGGNKGKIKGTVVLMSKKVLEFNNLDLKAGINLGLDVATSVFDGLHQIIGGAVSLQLINSTKADPGNGLGKLGKTAPLEGFIRTLPTLLNGQAACRVHFEYDDQFGLPGAFVIRNNLQNEFYLVSLTLDDIPNHSSIHFVCNSWIYPDSKYPSDRIFFANKAYLPSQTPAPLRKYREQELITLRGDGFSECKEWDRVYDYATYNDLGDPDSNAKLARPTLGGSADYPYPRRGRTSRQPNKSDPSTESRLLFLVENFDIYVPRDERFGHTKLSDFLAYLLKSVAQDLRPLLESAFRLSNEFKDFDNVRDLYSGGLKLPHDLLKDFSEKLPIPLLSELFRTDGEQFLRFPTPSIIKENVSGWMTDEEFARETLAGVNPCLIQCLQEFPPKSKLDANLYGDQTSKITKEQLEKSMNGFTVDEALSTRRLFILDHHDAFMLYLRRINSETGNKAYATRTVFFLKDDGTLKPLAIELSLPHPDGDQHGAVSKVILPADQGVDGTIWLLAKAYVTVNDSGFHQLVSHWLNTHAVIEPFIIATSRQLSVLHPIHKLLHPHFRDTMNINALARQALINASGIIELSFLPGKYAMEMSSKVYKNWVFPDQALPANLIKRGMAVEDPSCPHGLRLAVEDYPFAVDGLEIWDAIKTWVQDYVSCYYETDETVKQDSELQAWWKELVEVGHGDLKDKPWWPKMQTRKELVESCTIVIWTASALHAAVNFGQYPYGGYILNRPTLSRRLIPEEGSEEFEELKNNPEKAFLKTITPKIQTLIDLSVIEILSRHTSDEVYLGTRDSPDWTSDVKPLEAFKKFGKKLSEIEEKLIAKNKDEKLRNRVGVVNVPYTLLYPTSEEGLTSRGIPNSISI 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2185 872 PANTHER LIPOXYGENASE 18 872 IPR000907 GO:0016702|GO:0034440|GO:0046872
Prci12g2185 872 Pfam Lipoxygenase 183 855 IPR013819 GO:0016702|GO:0046872
Prci12g2185 872 ProSitePatterns Lipoxygenases iron-binding region signature 1. 528 542 IPR020833 GO:0016702|GO:0046872
Prci12g2185 872 ProSitePatterns Lipoxygenases iron-binding region signature 2. 555 565 IPR020834 GO:0016702|GO:0046872
Prci12g2185 872 Gene3D PLAT/LH2 domain 12 175 - -
Prci12g2185 872 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 19 175 IPR036392 GO:0005515
Prci12g2185 872 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 463 487 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 309 330 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 785 799 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 357 373 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 396 415 IPR001246 GO:0016491
Prci12g2185 872 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Prci12g2185 872 FunFam Lipoxygenase 371 505 - -
Prci12g2185 872 SUPERFAMILY Lipoxigenase 176 872 IPR036226 -
Prci12g2185 872 MobiDBLite consensus disorder prediction 224 257 - -
Prci12g2185 872 CDD PLAT_LH2 19 172 IPR042057 -
Prci12g2185 872 PRINTS Lipoxygenase signature 510 527 IPR013819 GO:0016702|GO:0046872
Prci12g2185 872 PRINTS Lipoxygenase signature 548 568 IPR013819 GO:0016702|GO:0046872
Prci12g2185 872 PRINTS Lipoxygenase signature 528 545 IPR013819 GO:0016702|GO:0046872
Prci12g2185 872 ProSiteProfiles PLAT domain profile. 43 171 IPR001024 GO:0005515
Prci12g2185 872 FunFam Lipoxygenase 507 871 - -
Prci12g2185 872 Pfam PLAT/LH2 domain 79 170 IPR001024 GO:0005515
Prci12g2185 872 Gene3D - 371 505 - -
Prci12g2185 872 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 872 IPR013819 GO:0016702|GO:0046872
Prci12g2185 872 FunFam Lipoxygenase 176 281 - -
Prci12g2185 872 SMART LH2_4 18 172 IPR001024 GO:0005515
Prci12g2185 872 Gene3D - 282 370 IPR027433 -
Prci12g2185 872 Gene3D - 506 871 - -
Prci12g2185 872 Gene3D - 176 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2185 Prci-Chr12 39347461 39352977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2185 14 872 Acyl Lipid Metabolism Gene Families AT1G55020 60.393 0.0 1089
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2185 K15718 - gmx:547869 1195.65