Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2126 ATGCATCGAGTAGCTTCCAAACTAGCTTCCTCCTTCAGCTCCTCCTCTTCCAAAAGGCTTGTGTATAATCGGATTTTATCCAACAGAAATTATGTGGCCAAAGATATCAACTTTGGAATTGGGGCTCGTGCCGCTATGCTCCAAGGGGTTTCTGAGGTTGCAGCGGCTGTAAAAGTAACAATGGGACCTAAGGGTCGCCATGTAATCATTGAGAAAAGTCATGGAAAACTCAAGATTACAAAGGATGGAGTGACCGTTGCCAAAAGTGTCAAATTTGAAGACAAGGCCAAAAATCTTGGTGCTGATCTTGTGAAGCAGGTGGCTAAGGCTACCAATACTGCTGCTGGCGATGGTACAACTTGTGCGACTGTTCTTACTCAGGCTATACTCACAGAAGGTTGCAAAGCAATTGCTGCTGGTGTAAATGTCATGGATTTGCGAAACGGCATAAATAAAGCAGTTGATGCTGTAATTACTGATTTGAAAAGCAGAGCATTAATGATTAGCACGCAAGAAGAAATAACCCAGGTTGGAACTATATCTGCTAATGGAGAGCGTGATATTGGAGAACTTATTGCAAGAGCAATGGAGAAAGTTGGAAAGGAGGGAGTCATTACTGTTGCTGATGGGAACACTTTGCATAATGAGTTGGAAGTGGTAGAAGGAATGAAGCTGGCCAGAGGCTATATATCTCCTTATTTTATTACTGATCATATGACCCAGAAATGTGAATTGGAGCACCCCCTTATACTTATCCATGAGAAGAAAATATCAGACATGAGCTCACTGGTGAAAATATTGGAGCTAGCAATGGAGAAACATAGGCCGCTTCTTGTTGTTGCGGAGGATGTTGAGAGTGATGCTTTGGCTATGCTCATACTCAACAAGCATCGTGCTGGGCTTAAGGTTTGTGCTATAAAAGCTCCTGGTTTTGGCGAAAACAGAAAAGCTAGTTTAGATGATCTAAGCATTCTTACTGGAGGAGAGGTCATTGCAGAAGAACATGGTTTGACCCTTGATAAAGTCCGGCTAGAAATGCTTGGTTCTGCTAAAAAGGTTACTGTTTCTCTTGATGATACTATTATTCTACATGGTGGTGGGGATAAGAAGCTCATTGAAGATAGATGTGAGCAGCTCAGGGAAGCAATTGAAAAGAGCACTGCCACATTTGATAAAGAGAAAGCACAGGAACGACTATCAAAGCTATCTGGCGGTGTAGCTATTTTCAAGGTTGGAGGATCTAGTGAAGCAGAAGTTGGGGAAAGGAAAGATAGGGTGACTGATGCTTTAAATGCTACCAGAGCAGCCGTGGAGGAGGGAATTGTGCCAGGTGGTGGAGTTGCTCTCTTATATGCCAGCAAAATATTGGACAACCTTCAAACCCAAAGCGAGGATGAGAAAAGAGGAGTAGAGATAATTCAGAATGCACTTAAGGCACCTGCATTCACAATAACTTCTAATGCTGGTTTTGATGGTGCCTTAGTTACCGGGAAATTGTTGGAACAAGACGATGACAAGTTTGGTTTTGATGCCGCTAAAGGTACTTATGTTGACATGGTGAAGTCTGGAATTATAGATCCTCTTAAAGTTGTTAGAACAGCCTTGGTTGATGCTGCCAGTGTGTCATTACTGTTGACAACAACTGAAGCAGCCGTGGTGGACGATCCGACTGACTCAAATAAACCTCCCAAACGTGTGGCAGATATGGATGAGTTGGACATCTAA 1725 0.429 MHRVASKLASSFSSSSSKRLVYNRILSNRNYVAKDINFGIGARAAMLQGVSEVAAAVKVTMGPKGRHVIIEKSHGKLKITKDGVTVAKSVKFEDKAKNLGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKAIAAGVNVMDLRNGINKAVDAVITDLKSRALMISTQEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLHNELEVVEGMKLARGYISPYFITDHMTQKCELEHPLILIHEKKISDMSSLVKILELAMEKHRPLLVVAEDVESDALAMLILNKHRAGLKVCAIKAPGFGENRKASLDDLSILTGGEVIAEEHGLTLDKVRLEMLGSAKKVTVSLDDTIILHGGGDKKLIEDRCEQLREAIEKSTATFDKEKAQERLSKLSGGVAIFKVGGSSEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYASKILDNLQTQSEDEKRGVEIIQNALKAPAFTITSNAGFDGALVTGKLLEQDDDKFGFDAAKGTYVDMVKSGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDDPTDSNKPPKRVADMDELDI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2126 574 MobiDBLite consensus disorder prediction 554 574 - -
Prci12g2126 574 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Prci12g2126 574 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 Pfam TCP-1/cpn60 chaperonin family 53 555 IPR002423 GO:0005524
Prci12g2126 574 Coils Coil 369 396 - -
Prci12g2126 574 NCBIfam chaperonin GroEL 33 557 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 SUPERFAMILY GroEL-intermediate domain like 168 236 IPR027410 -
Prci12g2126 574 Hamap Chaperonin GroEL [groEL]. 32 569 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 FunFam 60 kDa chaperonin 222 403 - -
Prci12g2126 574 Gene3D GroEL 222 403 IPR027409 -
Prci12g2126 574 SUPERFAMILY GroEL apical domain-like 215 406 IPR027409 -
Prci12g2126 574 Gene3D - 167 440 IPR027410 -
Prci12g2126 574 MobiDBLite consensus disorder prediction 558 574 - -
Prci12g2126 574 SUPERFAMILY GroEL equatorial domain-like 37 552 IPR027413 -
Prci12g2126 574 Gene3D - 36 553 IPR027413 -
Prci12g2126 574 CDD GroEL 34 554 IPR001844 GO:0042026|GO:0140662
Prci12g2126 574 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 30 563 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2126 Prci-Chr12 38673377 38679323 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2126 K04077 - gmx:100787285 919.842