Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2038 ATGATCTCATCCAATAGATGCAGCTTACTGAGCAACACAGGGTTAGCTAGATGTTCTAGTTCCTCTGCTCTACAGAGGAGACGTTTAATTCCTTTTAGAGTGGTTTGCGTGGCTTCTAGCAGTAGTTCAAGTGGTGACAGAAAACACAGCCCTGTGATGGAGACTATAGCTGACGTGGACAATAATCCAACCGTAGCCGGAGGTGTTCGGGATGTTTATGGTGAGGATAAGGCCACAGAAGATCAATTTGTTACTCCATGGAGTGTCTCTGTTGCTAGTGGGTATACCTTGTTGCGTGATCCACACTTTAACAAAGGGCTTGCCTTCACCGATAAAGAAAGGGATGCCCACTTCTTGCGAGGTCTTCTTCCCCCAACAAGTGTTTCACAAGAAACTCAGGTGAAGAAAATGCTCCAACATATACGTCAGTATCAAGTTCCTTTGCAGAGATACATGGCAATGATGAATCTCCAGGAGACAAATGAAAGGCTGTTTTACAAACTTCTTATTAGTCATGTTGAGGAGTTACTCCCGGTTGTCTACACTCCTACTGTTGGAGAAGCTTGCCAGAAATATGGGAGCATCTACATGCGTCCTCAGGGTCTTTATATAAGTTTAAAGGAGAAGGGGAGGGTTCTTGAAGTACTAAAAAATTGGCCTGAGAAAGACATTCAAGTTATTGTTGTAACTGATGGAGAGCGGATCCTTGGTCTCGGGGATCTTGGCTGTCAGTGCTTACCGATAACCATTGATGTTGGTACAAACAATGAGGGACTGTTGAATGATGAATTATATATAGGGCTTAAGCAAAGACGAGCAACGGGGCAGGAATATGCTGAACTTGTCCATGAATTTATGACAGCAGTCAAGCAAAATTATGGGGAAAAAATCCTTGTTCAGTTTGAAGACTTTGCGAACCATAATGCTTTTGATCTACTTGAAAAATATAGATCAACACATCTTGTTTTCAATGATGATATTCAGGGAACAGCATCGGTAGTCCTTGCTGGACTTGTTGCAGGTCTGAAATTTATTGGGGGGAAGTTATCTGATCACAAATTCTTATTCCTTGGAGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACTTCAAAACAGACAGGGGCCCCAATGGAAGAAGTGCGCAAAAACATTTGGCTGGTGGACTCAAAGGGATTGATTGTCAGCTCCCGTAAAGAATCGATTCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTATCACGGATCTTGTAGATGTTGTTAAAAATATTAAGCCAACAGTGTTGATTGGGACATCGGGCCGAGGCAAAACTTTTACTCAAGAGGTGATTGAGGCTATGGCTGAAATCAACGAGAGACCTATTATTCTTGCTCTTTCCAACCCAACATCACAGGCAGAATGTACTGCTGAAGAAGCTTATAAATGGAGTGAGGGACGTGCCATTTTTGCTAGTGGGAGCCCATTTGCCCCAATTGAATATGAGGAGAAAGTACTTGTGCCTGGCCAGGCCAATAATGCATACATCTTTCCCGGATTTGGTCTAGGTTTGATAATGTCTGGGACCATTCGAGTACACGACGACTTGCTTTTGGCTGCCTCGGAGGCTTTGGCTTCGCAAGTGACAGACGAGCACTTTGACAAGGGACTCATATACCCACCGTTCAAAGATATTAGAAAGATTTCAGCTCACATTGCTGCCAATGTAGCTGCCAAATCATATGAGCTTGGGTTGGCCACTCGTCTTCCTCAACCAAAAGATTTGGTTAAATTTGCTGAAAGCTGCATGTATACTCCAGCCTATAGAAGATATCGGTGA 1836 0.4352 MISSNRCSLLSNTGLARCSSSSALQRRRLIPFRVVCVASSSSSSGDRKHSPVMETIADVDNNPTVAGGVRDVYGEDKATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFTDKERDAHFLRGLLPPTSVSQETQVKKMLQHIRQYQVPLQRYMAMMNLQETNERLFYKLLISHVEELLPVVYTPTVGEACQKYGSIYMRPQGLYISLKEKGRVLEVLKNWPEKDIQVIVVTDGERILGLGDLGCQCLPITIDVGTNNEGLLNDELYIGLKQRRATGQEYAELVHEFMTAVKQNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAGLKFIGGKLSDHKFLFLGAGEAGTGIAELIALETSKQTGAPMEEVRKNIWLVDSKGLIVSSRKESIQHFKKPWAHEHEPITDLVDVVKNIKPTVLIGTSGRGKTFTQEVIEAMAEINERPIILALSNPTSQAECTAEEAYKWSEGRAIFASGSPFAPIEYEEKVLVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTDEHFDKGLIYPPFKDIRKISAHIAANVAAKSYELGLATRLPQPKDLVKFAESCMYTPAYRRYR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2038 611 Pfam Malic enzyme, N-terminal domain 158 244 IPR012301 GO:0004471
Prci12g2038 611 Pfam Malic enzyme, NAD binding domain 327 578 IPR012302 GO:0051287
Prci12g2038 611 Gene3D - 92 244 IPR037062 GO:0004471
Prci12g2038 611 PRINTS Malic enzyme signature 224 253 IPR001891 GO:0004470|GO:0004471
Prci12g2038 611 PRINTS Malic enzyme signature 457 473 IPR001891 GO:0004470|GO:0004471
Prci12g2038 611 PRINTS Malic enzyme signature 164 188 IPR001891 GO:0004470|GO:0004471
Prci12g2038 611 PIRSF ME 69 246 IPR001891 GO:0004470|GO:0004471
Prci12g2038 611 PIRSF ME 243 611 IPR001891 GO:0004470|GO:0004471
Prci12g2038 611 Gene3D - 245 324 IPR037062 GO:0004471
Prci12g2038 611 ProSitePatterns Malic enzymes signature. 323 339 IPR015884 GO:0004471
Prci12g2038 611 SMART Malic_M_2 327 580 IPR012302 GO:0051287
Prci12g2038 611 FunFam Malic enzyme 325 611 - -
Prci12g2038 611 SMART malic_2 158 317 IPR012301 GO:0004471
Prci12g2038 611 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 327 610 IPR036291 -
Prci12g2038 611 CDD NAD_bind_1_malic_enz 327 605 - -
Prci12g2038 611 Gene3D - 325 611 - -
Prci12g2038 611 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 71 326 IPR046346 -
Prci12g2038 611 PANTHER MALIC ENZYME-RELATED 62 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2038 Prci-Chr12 37930459 37936802 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2038 K00029 - gmx:100791514 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0836 13 7024330 7030214 Prci12g2038 12 37930459 37936802 CCT
Prci12g2038 12 37930459 37936802 Prci12g2038 12 37930459 37936802 ECH
Prci12g2038 12 37930459 37936802 Prci13g0836 13 7024330 7030214 ECH
Prci12g2038 12 37930459 37936802 Prci13g0241 13 1676065 1677918 ECH