Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2030 ATGGAAAGCAATTCGACAGTAATATCCAAGAGAGCGTGGAGCATTGTACGTGTCTTCTTCTTCATGCTCCGTAAAGGCTTCGCAAAAGGGAAACTCATGATGAACCTCAACCTCATGCTCAAACGTCCCGGAAAACTCGCCGGAAAAGCCATCGCCAATCACATCTCCCACCACCATGGCGGCTCCGCCACCTTCCACGACGTTCCCCTGCACTTCTCCACTGCACGAGAGTATGAGTTCAGCTGCAGCAACACTCCTAACTACAGCTTCTTCTCCAAACGCCGCAATCCCCGTCACTTGTTTGCGTGTGCTCAAGCGCCACTCACGTTGGACGATGACACGGTGGCGGTTCATAATGCCCTTAAGGTGGCATTGGAAATGCTGGATGACAAAAAATATAAGGATGTGGTGGAGGCGTCGCCGGAACTTCTAGGGTTTGGACGGACTGCCATGGGGAGACAGTTGAGGGTGACGGATTTGCCATTCCCGGTGCAAGATGGCAACAACGACAGGGACGACCCAGTTGACGAGGCGGCGGAGGAGTTCATAAAGAGGTTCTACAGGGAGTTGAGGAAGCAGGGTTGA 585 0.5299 MESNSTVISKRAWSIVRVFFFMLRKGFAKGKLMMNLNLMLKRPGKLAGKAIANHISHHHGGSATFHDVPLHFSTAREYEFSCSNTPNYSFFSKRRNPRHLFACAQAPLTLDDDTVAVHNALKVALEMLDDKKYKDVVEASPELLGFGRTAMGRQLRVTDLPFPVQDGNNDRDDPVDEAAEEFIKRFYRELRKQG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2030 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 5 193 - -
Prci12g2030 194 Pfam Cotton fibre expressed protein 173 193 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2030 Prci-Chr12 37858270 37859149 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2030 - - pcin:129289402 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0840 13 7117226 7118020 Prci12g2030 12 37858270 37859149 CCT
Prci12g2030 12 37858270 37859149 Prci13g0840 13 7117226 7118020 ECH
Prci14g1274 14 17015507 17016687 Prci12g2030 12 37858270 37859149 ECH
Prci12g2030 12 37858270 37859149 Prci12g2030 12 37858270 37859149 ECH