Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1952 ATGAGCGTTATTTGCAGCGCTTTGCAATGGGTGCTTGATCGTAGGCAACAGCAGAAATCAGCAGAAGCAGGACGGGATTGTGGTAAAAATGAGGAAAATCATGGTGGGGGTTCAGATGATGAACCTGATTGGATGAGAGATTTTGCTGTGGACAACGAAAAGCAAGTCCAATCTGAAAGAATAAGCAAGAAGAAGTATGGATCTAGATTAGGTATGCCTGGTAAGAAGAATAACAGGGAAATTTGCAAAGATTTTCAGGTTATAGGCGAAGATTCTCCTCCTGAAAAGGGGTATGAGAATTTGCGTGAGAAAATTGATAAAGTGGATGTGGATGTTATTGATGAGGAATTCTTACTCGAGGAATATGAAAGTGAAGATGAAGAAGCTCTGGATAATGTAGCGTCAAAGAGGAAGGCTTCTAAAAGTGGTTTTACTTCATCCAGTGAAGAGGATAAATCTGATGATGATGATGAGGAGGAGGAGGAGAAATTGAAGGTTTATTTCTGTAGCCGGACTCATTCACAGCTATCACAGTTCATAAAGGAATTAAGGAGAACAGTCTTTGCTGATGAGATGGACGTTGTTTGTTTGGGCTCCAGGAAAAATCTTTGCATCAACGAAGAAGTACTAAAACTTGGGAACTCTACACGCATAAATGAGCGATGCTTGGAACTCCAGAAGAAAAAGAAAAATGAACCAGCAAAAATTAAGAACTTAAGGGCATGTACAGGAGCACGGAGAACAAAGGCATTGTCTGGTTGCCCAATGCTTAGAAAGCAAAGGCTACAAAGAGAATTCAGGGATGAGGTCTCTCAGAGAGGGGCCTTGGATATTGAAGATCTTGCTAACTTGGGAAGAAATTTGGGAACTTGTCCTTATTATGGTTCTAGAAGCTTGGTTTTGAGTGCTGATCTTGTGGTTCTACCATATCAGTCTCTGCTGTCAAAATCATCTCGTGAAGCACTTGGTCTGAACTTGAAATCCAATGTTATCATTATAGATGAAGCTCATAATTTAGCTGATTCACTCATTAGGATGTATGACTCCAGAATTACTTTAGCGCAGCTAGAAAATGTGCATTCCCATTTGGAGAGATACTTTGGGAGATTCCGTAATCTTCTGGGACCTGGTAACAGGAGATATATTCAAACTATAATGGTCCTCACTCGAGCTTTCCTGCGAGTGCTGACCAATGGGAAGGATGCAAATCTCATAAATTCTTGCCCTGATATAGAAAAGGCTTTTCAGGAAAGTAGGGCCTCTGAATTTACCATGTCCGTCAATGATTTTGTCTTTGAACTAAATATAGACAACGTCAACTTGATTAAGATGGTGAAGTATATCAAGGAAAGCAAAATCATGCACAAGGTTTCTAGTTACGGAGAAAAGGCAGCCAACTTGCAGAAGATATCAGTAATCACTAAACTTGGAGAACATTATGAAGAGGGAAGCACTGAGTCTGCGTTCCAGGCATTATCTGACATATTGCTATCATTGACAAATAATAACAATGATGGAAGGATTATCATTTCCAGGCCTAGAACGATGAGCCCTAGGAAACAAGGAGGATATATTAAATATGTTATGCTCAGTGGAGAAAAGATATTTTCTGAGATTGCAGGCCAAGCACATGCTGTTCTATTGGTAGGGGGAACTCTACAACCTATTGAAGAAACACGAGAGCGACTCTTTCCGTGGTTACCATTAGACCAGTTTCATTTCTTTTCGTGTGGTCATATTGTCCCTCCGCAGAGTATTATGCCAATTGCAGTTTCCCGTGGCCCTGCTGGTCGCTCCTTTGATTTTAGCTACAGCGCAAGGAGCTCACATGATACTATGCAGGAGCTAGGTCTTCTTCTCTGTAATTTGGTGACCATAGTTCCTGAAGGAATTGTTGTTTTCTTCTCTTCTTTTGATTACGAAGCCAAAGTCTATGAAGCTTGGGAATCTTCTGGCATCCTGGAGAGAATTACTAGGAGGAAGCGTATATTTAGAGAGCCTAGAAATAATACAGATATTGAATCTGTTCTGAAAGAATATAAAGAAACAGTTTACCCATCATCGAGTATAATAAATTCAAATGGAAACCCAGCATTTCAGGGTGGTGCAGTCCTCCTAGCTGTTGTTGGTGGAAAGATATCTGAAGGAATTAACTTAAGTGATGGGATGGGCCGGTGCATAGTCATGGTTGGACTGCCATATCCTAGTCCTTCTGACATTGAGTTGCTAGAGAGGATAAAGCATATTGAAGGCTTTCGAAATTCAAACCCCATGGAAACTTCCACATTTTCTTCCAGTTATAATGTTTACAGTGGAGATGTACAAGGTGGCTTTGATATCTTAAGAAGTTGCAGTCACAGGGGAAAGGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATCCGTCACATTAATGACTACGCAGCAATTTTGTTGGTGGACACAAGGTATGCATCTGATTCCTCAAAAAGGAGCTTTTCTCATCCAGTGAACAAGCTCCCACGGTGGATAAAAGATCGATTGGTTTCGTCTACCACTAACTACGGTGAAGTCCACAGGTTATTGCATCAGTTTTTCAAATTTAACAGAAAGGTTTGTCACGCGGATGTATAG 2634 0.4066 MSVICSALQWVLDRRQQQKSAEAGRDCGKNEENHGGGSDDEPDWMRDFAVDNEKQVQSERISKKKYGSRLGMPGKKNNREICKDFQVIGEDSPPEKGYENLREKIDKVDVDVIDEEFLLEEYESEDEEALDNVASKRKASKSGFTSSSEEDKSDDDDEEEEEKLKVYFCSRTHSQLSQFIKELRRTVFADEMDVVCLGSRKNLCINEEVLKLGNSTRINERCLELQKKKKNEPAKIKNLRACTGARRTKALSGCPMLRKQRLQREFRDEVSQRGALDIEDLANLGRNLGTCPYYGSRSLVLSADLVVLPYQSLLSKSSREALGLNLKSNVIIIDEAHNLADSLIRMYDSRITLAQLENVHSHLERYFGRFRNLLGPGNRRYIQTIMVLTRAFLRVLTNGKDANLINSCPDIEKAFQESRASEFTMSVNDFVFELNIDNVNLIKMVKYIKESKIMHKVSSYGEKAANLQKISVITKLGEHYEEGSTESAFQALSDILLSLTNNNNDGRIIISRPRTMSPRKQGGYIKYVMLSGEKIFSEIAGQAHAVLLVGGTLQPIEETRERLFPWLPLDQFHFFSCGHIVPPQSIMPIAVSRGPAGRSFDFSYSARSSHDTMQELGLLLCNLVTIVPEGIVVFFSSFDYEAKVYEAWESSGILERITRRKRIFREPRNNTDIESVLKEYKETVYPSSSIINSNGNPAFQGGAVLLAVVGGKISEGINLSDGMGRCIVMVGLPYPSPSDIELLERIKHIEGFRNSNPMETSTFSSSYNVYSGDVQGGFDILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFSHPVNKLPRWIKDRLVSSTTNYGEVHRLLHQFFKFNRKVCHADV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1952 877 SMART Cxpdneu3 638 826 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Prci12g1952 877 Gene3D - 598 839 IPR027417 -
Prci12g1952 877 MobiDBLite consensus disorder prediction 18 66 - -
Prci12g1952 877 MobiDBLite consensus disorder prediction 14 77 - -
Prci12g1952 877 NCBIfam DNA repair helicase (rad3) 95 855 IPR013020 GO:0003678
Prci12g1952 877 Gene3D - 140 389 IPR027417 -
Prci12g1952 877 Coils Coil 119 139 - -
Prci12g1952 877 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 1 867 IPR045028 -
Prci12g1952 877 Pfam DEAD_2 168 356 IPR010614 GO:0003677|GO:0003678|GO:0005524
Prci12g1952 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 1 385 IPR014013 GO:0005524
Prci12g1952 877 Pfam Helicase C-terminal domain 620 837 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Prci12g1952 877 MobiDBLite consensus disorder prediction 123 159 - -
Prci12g1952 877 SMART deadxpd 1 378 IPR006554 GO:0003678|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1952 Prci-Chr12 37194437 37199297 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1952 K11273 - gmx:106794132 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1952 12 37194437 37199297 Prci12g1952 12 37194437 37199297 ECH