Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1921 ATGCCTCTCAGACTCGAGATCAAGAGAAAGCTTGCCCAAAGATCAGAAAGAGTAAAATCCGTGGATCTACATCCAAGGGAACCATGGATTCTAGCAAGTTTATACTCAGGAACTGTCTGTATTTATGACTACCAGTCTCAGACCATGGCAAAGTCATTTGAGGTCACTGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAGGCAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAAGCACATACAGATTACATAAGGTGTGTGGCAGTTCACCCTACCCTTCCTTATGTCCTGTCATCTTCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGTTGGGTATGTACTCAGATATTTGAGGGACATTCCCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACTAATACATTTGCCAGTGCATCTCTAGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGATCCCAATTTTACATTGGATGCCCATCAGAAAGGAGTGAATTGTGTTGACTACTTTACAGGCGGTGACAAACCTTATCTGATAACTGGTTCTGATGATCATACTGCTAAGGTATGGGACTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACGCACAATGTATCTGCTGTATGCTTTCATCCTGATCTTCCTATAATTATTACTGGTTCAGAGGATGGTACAGTGCGCATATGGCATTCAACAACTTATAGACTGGAGAACACATTGAATTATGGTCTTGAAAGAGTTTGGGCTATTGGATATGTTAAAGGTTCACGTCGGGTTGTGCTTGGCTATGATGAGGGAACTATTATGGTCAAATTGGGCCGCGAAGAGCCTGTGGTCAGCATGGACAATAGTGGGAAAATTATTTGGGCTAAACATAATGAAATTCAGACAGTCAATATAAAGAGTGTAGGAGCAGATGTGGAGGTTGCTGATGGAGAAAGATTACCTTTGGCTGTTAAGGAGTTGGGCACGTGTGATCTCTACCCACAAAGTTTAAGGCACAATCCAAACGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAATATATTATATACACTTCATTGGCATGGAGAAATAGGTCATTTGGTTCTGCACTGGAAATTGTTTGGTCTTCAGACGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCACAAAAAATTTTTTTAATGAATTTCAGGAAAAGAAGAATATTCGACCAACTTTTTCTGCTGAACGAATATTTGGTGGCACCTTGTTGGCAATGTGCTCAAATGATTTCATTTGCTTTTATGATTGGAGTGAATGCAGGTTAATCCGTCGTATTGATGTTAATGTGAAAAATCTCTACTGGGCTGATAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATATAGTTGCATCATCTTTGGATGGTGGAAGACCTGTCGATGATCTAGGGGTGGAAGATGCATTTGAGCTCCTTCATGAAATAAATGAACGGGTTAGGACAGGCATCTGGGTTGGAGATTGTTTTATTTACAACAATTCCTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGATCGACCTATGTACTTGCTGGGATATCTTGCCAGCCAAAGTCGGGTCTATCTGATAGACAAAGAGTTCAATGTCATGGCATACACATTGCTTCTGAGCTTGATTGAGTACAAGACTCTTGTAATGCGTGGTGATTTGGGTAGGGCCAATGCAGTTCTACCTACAATTCCTAAAGAGCATCATAATAGTGTGGCTCATTTCCTGGAATCACGAGGGATGATAGAGGATGCCCTTGAAGTAGCAACTGATCCTGACTACAGATTTGAGTTAGCCATGCAGCTTGGGAGACTGGAGGTGGCAAAGAGTATTGCAACAGAAGTGCAAAGTGAATCTAAATGGAAGCAGTTGGGAGAACTGGCTATGTCTACTGGAAAGTTAGAAATGGCTGAAGAATGTTTAAAGAATGCAATGGATTTGAGTGGATTGTTACTGCTATATTCTTCTTTAGGAGATGCTGAGGGAATATCAAATCTTGCAACCCTTGCTAAAGAGCAAGGGAAGAACAATGTCGCATTCCTTTGCATGTTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTGTTGGTAGAAAGCAATCGGATTCCTGAAGCTGCTTTAATGGCACGGTCTTATCTCCCAAGCAAGGTCTCAGAGATAGTAGCAATTTGGAGAAAAGATCTCCATAAGGTTAGCCCCAAAGCTGCTGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGAAGACTGGCAAATTGCAGTTGCTGTCGAGTCTAAAGCTACAGAGACAAGGGGTGCTTACCCTCCTGCACAGGAGTATGTCAAGCGTGCTGGAAAGTCATATGTTACCCTTGTCGACACTTTTAGAAATATGCAGAGTGAAGAGGGGAAGGAGCTTCTTGAGAATGGAGATTCTAATCATGAGTTGGTTGAACAGAATGAAGAAGAGCTCGACGCAGAGGAAAGGCAGGAGGAACAGAATGGAGAGGAGGCTGTTGTGGTGGATGCTGATTCTACAGATGGTGCAGTACTTGTTAATGGCAACGAGGCTGATGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAACCTAA 2763 0.4166 MPLRLEIKRKLAQRSERVKSVDLHPREPWILASLYSGTVCIYDYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYVKGSRRVVLGYDEGTIMVKLGREEPVVSMDNSGKIIWAKHNEIQTVNIKSVGADVEVADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTSLAWRNRSFGSALEIVWSSDGEYAVRESTSKIKIFTKNFFNEFQEKKNIRPTFSAERIFGGTLLAMCSNDFICFYDWSECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDIVASSLDGGRPVDDLGVEDAFELLHEINERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMAYTLLLSLIEYKTLVMRGDLGRANAVLPTIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFELAMQLGRLEVAKSIATEVQSESKWKQLGELAMSTGKLEMAEECLKNAMDLSGLLLLYSSLGDAEGISNLATLAKEQGKNNVAFLCMFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLHKVSPKAAESLADPEEYPNLFEDWQIAVAVESKATETRGAYPPAQEYVKRAGKSYVTLVDTFRNMQSEEGKELLENGDSNHELVEQNEEELDAEERQEEQNGEEAVVVDADSTDGAVLVNGNEADEEWGTNNEGAPST 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Prci12g1921 920 PIRSF Beta'-COP 2 893 IPR016453 -
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Prci12g1921 920 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Prci12g1921 920 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Prci12g1921 920 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Prci12g1921 920 Coils Coil 862 886 - -
Prci12g1921 920 CDD WD40 17 297 - -
Prci12g1921 920 Gene3D - 594 802 - -
Prci12g1921 920 PANTHER COATOMER 5 313 - -
Prci12g1921 920 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Prci12g1921 920 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Prci12g1921 920 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Prci12g1921 920 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Prci12g1921 920 Gene3D - 11 300 IPR015943 GO:0005515
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Prci12g1921 920 SMART WD40_4 174 215 IPR001680 GO:0005515
Prci12g1921 920 SMART WD40_4 46 85 IPR001680 GO:0005515
Prci12g1921 920 SMART WD40_4 4 43 IPR001680 GO:0005515
Prci12g1921 920 SMART WD40_4 131 171 IPR001680 GO:0005515
Prci12g1921 920 SMART WD40_4 218 257 IPR001680 GO:0005515
Prci12g1921 920 SMART WD40_4 88 127 IPR001680 GO:0005515
Prci12g1921 920 MobiDBLite consensus disorder prediction 855 920 - -
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Prci12g1921 920 FunFam Coatomer subunit beta 594 802 - -
Prci12g1921 920 FunFam Coatomer subunit beta 11 300 - -
Prci12g1921 920 SUPERFAMILY WD40 repeat-like 227 498 IPR036322 GO:0005515
Prci12g1921 920 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Prci12g1921 920 CDD Coatomer_WDAD_beta-like 304 782 - -
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Prci12g1921 920 Pfam Coatomer WD associated region 319 767 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Prci12g1921 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1921 Prci-Chr12 36793987 36804844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1921 72 309 Miscellaneous Gene Families AT5G08390 25.630 1.10e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1921 K17302 - gmx:106794271 1684.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0945 13 7826914 7838137 Prci12g1921 12 36793987 36804844 CCT
Prci12g1921 12 36793987 36804844 Prci12g1921 12 36793987 36804844 ECH