Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1789 ATGGGGGGAGCTTGTTCTAGGAAGCAAAATCGAGACAGTGAAGATAAAAGTGGGAGTTTGAAACGGTTGAATTTATCATTTTCTCATCCGTCTATGGATTATCATTCACAGAAAGGGGAATGTCCATCATTGTTGGACTTATGTGTCCGGAAAATATGCGAGGAGATTCACAAGCATAGCACATTTTCTTCGATCCCACGGGACCTAAGTCAACAAATTCTTAATGAATTGGTGTATTCCCAACGTCTGAGTAGTGCTTCTTTCAAGGCTTTTCAAGATTGTTCTCTCCAGGATTTCTACTTGGGAGAATATCCTGGTGTGAATGACAGTTGGATGCAAATTATCTCATCGCAAGGGTCATCTTTACTATCTTTGGATCTTTCTGGGTCTGATGTCACTGATTATGGGCTGGCTTATCTCAAAGATTGCACAAATCTTTTAACCTTGAATCTTAATCACTGTGACCAGATTTCAGACCATGGTCTGGAGTATATCAATGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAACAATGCCATTTCTGCGGAAGGAGTAAGTTCATTTTCTGGTCTTGTTAACTTGGTTAAGTTGGATTTGGAGAAATGTCCTGGGATTCATGGAGGCCTTGTTCATCTTCAAGGTTTAACCAAGCTGGAATCTCTAAATATGAAGTGGTGTAACTGCATAACAGATGCTGACATGAAGCCTTTATCAGAGATGACAAACTTGAAGAGTCTAGAGATTTCATGCAGTAAAGTGACAGATTTTGGCGTCACTTTCTTGAAAGGATTACAAAAGCTTGTTCAGTTAAATTTGGAAGGATGCCTTGTTACAGCTGCATGCTTGGATTCTCTAGCAGAGCTTCCTGCCCTGTCAAACTTGAATCTCAATAGATGTAATCTTTCAGATGATGGATGTGAAAAATTTTCAAGACTGCAAAATTTGAAAGTGCTAAACTTGGGATCCAACAATGAGATAACGGATGCTTGTTTAGCATACTTAAAAGGATTGACAAAATTAGAGAGCTTGAACCTAGATTCATGTAGGATTGGTGATGAAGGGCTGATCAATCTGGCGGGCCTTCGGCAGTTGAAATGCTTGGAATTGTCTGATACAGAAGTTGGTAACAGTGGGCTCCACCATATATCAGGATTGTCTAGTCTGGAGAAGGTAAACCTGTCTTTCACTATGATAAGTGATGGCGGTTTAAGGAAATTGTCTGGACTCTCATCTCTGAAGTCACTTAATTTGGATGCTCGCCAAATAACTGATGCTGGACTAGCAGCCCTTACAAGTTTGACTGGGCTTATTGAGCTGGATTTGTTTGGTGCACGAATCACAGATTCTGGAACGAACTACTTAAGAAACTTTAAGAACCTGAGGTCGCTGGAAATATGTGGTGGAGGATTGACTGATGATGGTGTCAAAAATATCAAAGAGCTTTCATCTCTGATGTGCTTGAATTTATCACAGAACTGTAGCCTTACGGACACATCCCTGCAGTTAATTTCTGGCCTCACTAAGCTGATCTCTTTGAACGTATCCAATTCTCATGTGACCAATGCGGGTCTGCAGCATCTGAAAACGCTAAAAAGTTTGAGATCTCTGACATTGGAGTCCTGCAAGGTGACAGCGAATGACATTAGGAAACTTAAATCAGACCTCCCTAATCTGGTTAACTTTCGGCCAGAATAG 1701 0.4062 MGGACSRKQNRDSEDKSGSLKRLNLSFSHPSMDYHSQKGECPSLLDLCVRKICEEIHKHSTFSSIPRDLSQQILNELVYSQRLSSASFKAFQDCSLQDFYLGEYPGVNDSWMQIISSQGSSLLSLDLSGSDVTDYGLAYLKDCTNLLTLNLNHCDQISDHGLEYINGLSNLTSLSFRRNNAISAEGVSSFSGLVNLVKLDLEKCPGIHGGLVHLQGLTKLESLNMKWCNCITDADMKPLSEMTNLKSLEISCSKVTDFGVTFLKGLQKLVQLNLEGCLVTAACLDSLAELPALSNLNLNRCNLSDDGCEKFSRLQNLKVLNLGSNNEITDACLAYLKGLTKLESLNLDSCRIGDEGLINLAGLRQLKCLELSDTEVGNSGLHHISGLSSLEKVNLSFTMISDGGLRKLSGLSSLKSLNLDARQITDAGLAALTSLTGLIELDLFGARITDSGTNYLRNFKNLRSLEICGGGLTDDGVKNIKELSSLMCLNLSQNCSLTDTSLQLISGLTKLISLNVSNSHVTNAGLQHLKTLKSLRSLTLESCKVTANDIRKLKSDLPNLVNFRPE 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1789 566 Pfam Leucine rich repeat 291 352 IPR001611 GO:0005515
Prci12g1789 566 Pfam Leucine rich repeat 461 520 IPR001611 GO:0005515
Prci12g1789 566 Gene3D Ribonuclease Inhibitor 290 387 IPR032675 -
Prci12g1789 566 FunFam Leucine-rich repeat family protein 209 287 - -
Prci12g1789 566 FunFam Predicted protein 107 208 - -
Prci12g1789 566 SMART LRR_RI_2 217 247 - -
Prci12g1789 566 SMART LRR_RI_2 290 319 - -
Prci12g1789 566 SMART LRR_RI_2 339 365 - -
Prci12g1789 566 SMART LRR_RI_2 532 559 - -
Prci12g1789 566 Pfam Leucine Rich repeat 143 165 IPR001611 GO:0005515
Prci12g1789 566 Pfam Leucine Rich repeat 218 240 IPR001611 GO:0005515
Prci12g1789 566 Pfam Leucine Rich repeat 169 191 IPR001611 GO:0005515
Prci12g1789 566 Gene3D Ribonuclease Inhibitor 470 562 IPR032675 -
Prci12g1789 566 Gene3D Ribonuclease Inhibitor 68 207 IPR032675 -
Prci12g1789 566 Gene3D Ribonuclease Inhibitor 208 289 IPR032675 -
Prci12g1789 566 Gene3D Ribonuclease Inhibitor 388 469 IPR032675 -
Prci12g1789 566 SMART LRR_CC_2 339 363 IPR006553 -
Prci12g1789 566 SMART LRR_CC_2 508 532 IPR006553 -
Prci12g1789 566 SMART LRR_CC_2 143 168 IPR006553 -
Prci12g1789 566 SMART LRR_CC_2 459 483 IPR006553 -
Prci12g1789 566 SMART LRR_CC_2 217 242 IPR006553 -
Prci12g1789 566 SMART LRR_CC_2 243 272 IPR006553 -
Prci12g1789 566 SMART LRR_CC_2 411 435 IPR006553 -
Prci12g1789 566 SMART LRR_CC_2 290 314 IPR006553 -
Prci12g1789 566 SUPERFAMILY L domain-like 409 559 - -
Prci12g1789 566 SUPERFAMILY RNI-like 114 452 - -
Prci12g1789 566 PANTHER UNCHARACTERIZED 19 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1789 Prci-Chr12 35724072 35734228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1789 95 547 Receptor kinase-like Gene Family AT5G51350 24.435 1.80e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1789 - - gmx:100800666 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1789 12 35724072 35734228 Prci12g1789 12 35724072 35734228 ECH