Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1786 ATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAGTTTCTGGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAACAAGAGTCTGGGTTTTTCTTTAACATGAAATATTTCGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTTGAAAGATACCTCTCTGGTTTCACAAAAGTTGATGATAATCGGTATTCAATGAAGATATTCTTCGAGATTCGGAAGCAGAAATACCTTGAGGCGTTAGATAAGCACGACAGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTAAAAGTTTTTTCAACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACATTGGAGAATTTCAGGGAAAATGAACAATTGTCAAAGTACGGTGATACAAAGTCTGCAAGGGCAATCATGTTGATTGAACTTAAAAAGCTGATTGAAGCGAATCCCTTATTCCGTGACAAGTTGCAGTTCCCCAACCTTAAAAATTCAAGATTACGAACTCTCATCAATCAAAGCTTGAATTGGCAACATCAACTCTGTAAGAATCCAAGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCATGTGGACAGCCAAATGGTGCACGGGCTCCATCACCTGTTAATAATCCACTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCTCTAGGTGCACATGGGCCATTTCAACCTACAACAGCACCTGTGCCAACACCCCTGGCAGGTTGGATGTCAAATCCTACCACTGTAGCTCATCCTGCGGTTTCTGGTGGAGGAGCTATAGGTCTTGGTGCTCCTTCAATCTCTGCTGCTTTGAGGCACCCTAGGACCCCTCCAACTAACCCATCTGTTGACTACCCATCTGGAGATTCTGACCACGTATCTAAGAGACCAAGGCCAATGGGAATGCCTGATGAGGTGAATCTACCTGTTAATGTGTTGCCAGCTGCATTACCAGGTCATGGGCATATCCAAGCTTTTAGTGCACCTGATGACTTACCAAAGACTGTTATACGAACTCTGAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAGCTGAGTTTACTTCTTGTTGGTACTAATGTGGGAGACATTGCTTTGTGGGAAGTGGGCTCTCGAGAGAGATTGGTCCTAAAGAACTTTAAAGTTTGGGAGCTAAGTGCCTGTTCAATGCCACTTCAGGCTGCTCTTGTCAAAGATCCTAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCATATTGTTCAGATATACTCATACCATGGTGGGGATGATGCCCGCCAACACCTGGAGATTGATGCCCATGTCGGAGGAGTGAATGATCTGGCATTTTCACACCCAAACAAGCAATTATGTGTCATAACTTGTGGCGATGATAAGACCATCAAGGTTTGGGATGCTGCTACTGGGGCAAAACAATTTACTTTTGAAGGTCACGAGGCTCCAGTCTATTCAGTCTGTCCTCATTACAAAGAAAACATTCAGTTTATATTTTCAACAGCATTAGATGGAAAGATAAAAGCATGGTTGTATGACAATTTGGGTTCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGTGGCACAAGCAAAGAAGGAGAATCCTCAATCGTTGAATGGAATGAAAGTGAAGGAGCTGTCAAAAGAACATATCAAGGATTTCGTAAACGATCATTGGGCGTTGTACAATTTGATACAACAAAAAATCAATTTTTGGCTGCTGGTGATGAATTCTTAATTAAATTCTGGGATATGGACAACGTTCAACTTTTGACAACTGTTGATGCTGATGGAGGTCTACCTGCAAGCCCGCGTATCCGTTTCAACAAGGATGGAACCCTCTTAGCTGTTTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGCAGATGGTATAAGATTGTTACGAACATTAGAGAATTCTGCATATGAGGCATCGAGACCATCTGAAGCCATAAAGCCCACAATAAATCCAATTTCAGCGGCTGCTGCTGCTGCTGCAAGTAGTGCTGCACTTGCAGAGAGGGGCTCATCTATAGTATCTATTTCGGGAATGAATGGGGATGCTCGGAATATGGGTGATGTTAAACCTAGAATAGCTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCAGCTCAATGTAGATCCTTGAAGCTACCTGAGAATCTGAGATTAACGAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCAATACTGGCATTAACATCAGATGCAATTCATGTGCTCTGGAAATGGCAGCGAAGTGATCGAAATTCTTCTGGCAAGGCCACTGCCAGTGTCGCACCACACTTTTGGCAACCATCAAGCGGCATCCTGATGACCAATGACATTTCCGACAGCAATCCTGAGGATGCTGTGCCTTGCTTTGCTCTCTCCAAAAATGATTCTTACGTGATGTCAGCATCAGGAGGGAAAATTTCACTGTTCAATATGATGACTTTCAAGACAATGACAACTTTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTCCACCCTCAGGATAACAATATTATAGCTATTGGGATGGATGATTCCACCATTCAGATATATAACGTCCGTGTGGATGAGGTCAAAAGTAAACTCAAAGGTCACACCAAAAGAATAACTGGCCTTGCTTTTTCCCATGCATTGAATGTGTTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAGTACTGATGGATGGGAAAAGCAGAAGAGTATAGTCTTGAAGATTCCTGCAGGGAGGACTCCAACAGCACAGGCAGAAACCCGTGTACAGTTTCACCAAGATCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGCCATATATGAAACAACAAAACTAGAATGTCAAAAGCAGTGGTTTCCAAGAGAGTCTATTGCACCCATATCAGCCGCAACTTTCTCATGTGATAGCCAGCTGATTTATGCCAGCTTTTTAGATGCAACAGTTTATGTCTTCAGTGCATCAAACCTCAGATTTTGTTGTCGAATCAATCCTTCTGCTTATCTTTCTGCCAGTGTCAGTTACTTTTGGGATAAAGCTGGGCACATGTTGTATTTGTTGGGCACAAATATCCTTTGGAAGATTCAAGGCTCACAAATTTTCACATTGGAGGAATTTTCTATTTGTGCTTTAAGCAGTCCCAGTGTACAACCACTTGTCGTGGCAGCACATCCACAAGAACCAAATCAGTTTGCTTTAGGACTGTCAGATGGTGCAGTTCATGTGTTTGAGCCACTTGAGTCTGAAGGCAAGTGGGGTTTGTCTCCTCCCATTGAGAATGGATCAGCAAGCAATGCAGCAGCTACTTCAGTAGGAGTTTCTTCAGATCAAGCCCAGAGATGA 3519 0.4263 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVNNPLLGSLPKAGGFPPLGAHGPFQPTTAPVPTPLAGWMSNPTTVAHPAVSGGGAIGLGAPSISAALRHPRTPPTNPSVDYPSGDSDHVSKRPRPMGMPDEVNLPVNVLPAALPGHGHIQAFSAPDDLPKTVIRTLNQGSSPMSMDFHPVQLSLLLVGTNVGDIALWEVGSRERLVLKNFKVWELSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDARQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNQFLAAGDEFLIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRLLRTLENSAYEASRPSEAIKPTINPISAAAAAAASSAALAERGSSIVSISGMNGDARNMGDVKPRIAEESNDKSKIWKLTEINEPAQCRSLKLPENLRLTKISRLIYTNSGNAILALTSDAIHVLWKWQRSDRNSSGKATASVAPHFWQPSSGILMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWSTDGWEKQKSIVLKIPAGRTPTAQAETRVQFHQDQIHFLVVHETQLAIYETTKLECQKQWFPRESIAPISAATFSCDSQLIYASFLDATVYVFSASNLRFCCRINPSAYLSASVSYFWDKAGHMLYLLGTNILWKIQGSQIFTLEEFSICALSSPSVQPLVVAAHPQEPNQFALGLSDGAVHVFEPLESEGKWGLSPPIENGSASNAAATSVGVSSDQAQR 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1786 1172 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 961 IPR001680 GO:0005515
Prci12g1786 1172 SUPERFAMILY WD40 repeat-like 343 666 IPR036322 GO:0005515
Prci12g1786 1172 SMART Lish 4 36 IPR006594 GO:0005515
Prci12g1786 1172 MobiDBLite consensus disorder prediction 283 310 - -
Prci12g1786 1172 Gene3D - 809 1088 IPR015943 GO:0005515
Prci12g1786 1172 FunFam Topless-related protein 1 324 542 - -
Prci12g1786 1172 Gene3D - 515 805 IPR015943 GO:0005515
Prci12g1786 1172 MobiDBLite consensus disorder prediction 1145 1172 - -
Prci12g1786 1172 SMART ctlh 34 92 IPR006595 -
Prci12g1786 1172 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Prci12g1786 1172 Gene3D - 322 512 IPR015943 GO:0005515
Prci12g1786 1172 MobiDBLite consensus disorder prediction 1150 1172 - -
Prci12g1786 1172 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Prci12g1786 1172 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Prci12g1786 1172 Pfam WD domain, G-beta repeat 457 491 IPR001680 GO:0005515
Prci12g1786 1172 Pfam WD domain, G-beta repeat 919 952 IPR001680 GO:0005515
Prci12g1786 1172 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
Prci12g1786 1172 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1156 IPR027728 GO:0006355
Prci12g1786 1172 FunFam Topless-related protein 3 739 973 - -
Prci12g1786 1172 SMART WD40_4 913 952 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 1004 1045 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 830 867 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 584 624 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 870 910 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 450 491 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 494 535 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 1096 1136 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 344 383 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 405 444 IPR001680 GO:0005515
Prci12g1786 1172 SMART WD40_4 538 581 IPR001680 GO:0005515
Prci12g1786 1172 SUPERFAMILY WD40 repeat-like 838 1066 IPR036322 GO:0005515
Prci12g1786 1172 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1786 Prci-Chr12 35710301 35719491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1786 455 668 Miscellaneous Gene Families AT5G08390 23.288 7.73e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1786 - - gmx:100790282 2047.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1786 12 35710301 35719491 Prci12g1786 12 35710301 35719491 ECH