Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1537 ATGGCAACTGAGAGTCTCATGAGAATGGTGGAAGGCAGCCAAACTAGTCAATGGCTTTCGTCAAAGGATATTCCAGCATTTGGATCTTTCTGGAGAAATAAATCAACAGAGGAACTGGACATTTTCTTGAAGGGACAAAAGCTCAGTCAATGCCAAGCAGACTTCACTCCTAATCGAAGTGGTAGTGCTCCACCTAGTATGGAGGGCTCAGTTGCAGCAGTTGGCAATATGTTACCTGTGAAGGATTCTAGTCTGGTTTCCAATTCACGAAGATTGAGCAATGCTCTTGGGGATCACAAGTCTGAAGGAGAGCTATTTGATCCTTCTAATGTTGCATGTTGCTTGTTGGAGCTCAACTTGGATCCCAAGCTTCCTAATCAATTTAGCAATCATGAAAAAAATCAAGGCATTGCTGATTCAGATGATGGAGGCATGGTTGACCCTTATACTATTGAGGCTGCCAACATAAAAGGTTCATCAAAGCTAGCTTCAGAAAGCCTGTTCAATCCCAATAGCATGCCTAACCCTGGGAATAATGCAGTCCTATCAGCTAGTCTTCACAAAAGCTTGGTGGATTTAATACAGGAAGACTTCCCCCGTACCCCTTCCCCTGTATATAACCAGTCTCATTTATCAAGCCATGCTACAACTCAAGATTCAGTTGATGTTGATGTGCAAGCAATTTCTTCAAGTGTTTCTTCAATAGATTTATCAAACCAGCCAGACTCAGCTACATGTTCTACTGGTGCTGTGGTGACAGGCATTCTGAACACAGATGCTTGCGAGCTAACATCCAATCAGGTTTCTCTGTTAAACTTCCAAAGTTTGCAGCATGCTGATGAAACCCAAAACCTGTCAGTGGAACCAAGTCCAACAAACAACAAAGATGCTTTACTGAAGGATTATGTATCAAGAGATGGGGCTGTAAATTTGGAGGAGCATAAATTGAGGGCCTCTGATGTTAGAAGGGAAAGACAAGAACAACAACAATCTTATGGTAGGAATAAGCTAAATCAATCTTTTACGTCTGACTATGCTTATAAACTTCAAGTCACGGGGTCACAATTTTCTCAAGGCATAAACAATTCACATAGTTACTTGGGAATGCTTGCGTATAGTAATTTACAATTTTCACCTCTTGGGATACAATCGTCATCGCCTTCTACTGGACTTACTGGTCCCTATTATGCAACTCCAACTGCATTTATGACTTCAGGAAACCCATTTTATCATGATATCCAGCCTTCAGGTTTCCTCCCTCCACAGTATCGTCTAGGTGGGTATGCTTTAGGTTCTACATCTGTTGCCCCATATATGGTTGGATATTCTTCACAAGGAGACCCTCTTCCATTTGAAGCTGCAGGTAGCCAAGACCTGAATGGTCAAGCTACCAATGCTCCATTAGGAGACGGTGTTCCACATGCTTCTGGTTTTCAAAGTCACAGCAAGATTTGTGGGCAATATGGGTTACCAATGCAGCCTTCATATGCTAATCCAATTAATATGCGATATTTTCCCCACACTTCCAGTGATGTGTACCCTGCTTTTCATCAGAGTCAATTGTCATCAAGATCACTGACTGGAGGACTGGCTTGTTCTCTACCTTCCCATCAAGATGCAGCTGTTCCTGCCTATTTAAATGGTCATAAATTTCAATCTTCAGCACATGGTAGCTTGACCATTCCAAGTAACAAAAATATGGGGATCTCTGGTAGTAGTTATTATGGGAACTCCAATAAGGGTGTTGTGATGCAATGTCCTCCTTTGTCTTGTGGTGTTTCAATTTCTCCATCATCATCAATTGGCAAAATTAACCCTTTAGGTGGAAAAATTGATAAGAAGATGCCTCATGTTTCCGTCAGAAATGCAGGATTTTCTCCTGGACAGAGAGCAATTAAGGGTTTTGGTGTAACCAAGCAGCAGTCTTTCCTAGAGGAACTTAAATCCATCAATCACAAGGAGTTCAAACTCTCTCATTTAGCTGGGCGTGTTGTTGAACTCAGTATTGACCAACATGGAAGTCGATTTATCCAGCGGAAGCTTGAAAACTGCAGTGCTGAAGAGAAGGCATCTGTTTTTGAAGAAATCCTTCCATATTCATCAAAATTAGTGACGGATGTGTTTGGCAATTATGTAATTCAGAAGTTTTTTGAGCATGGAAGCCCTGATCAGCGAAAAAACCTTGCAGATCAGCTTTCTGGACAGATTTTACCATTAAGTTTGCAGATGTATGGCTGTCGTGTTATCCAGAAGGCCCTTGAAGTTATTGAATTAGATCAGAAGACACTGTTAGTGCAAGAGCTTGATGGACATGTCATGAGATGTGTACACGATCAAAATGGCAATCATGTCATACAAAAATGTATAGAATGCATTCCTGTGGGCAAAATCCACTTTATTATATCTGCATTTCAAGGGCAAGTTCCGGCTCTTTCTGTTCACCCATATGGGTGTCGTGTTATTCAGAGAATTTTGGAGCATTGTTCAGATGAGCAATGTATTCAATTTATCGTGGATGAAATTATGGAGTCTGCTTGTGTCCTTTCTCAAGATCAGTACGGCAATTACGTGACTCAGCACGTACTGAAAAGGGGGAAAAATGAAAGAGGTCAAATTATAAGAAAATTAGCTGGCAGCATTGTACAATTGAGCCATCATAAGTATGCTTCTAATGTTATTGAGAAGTGTTTGGAGCATGGTGATGCAACTGAACGAGAGGCCATGATTGCAGAAATTATTGGGCAGCCTGGTGAAGACCATAATTTATTGACAATGATGAAGGACCAGTTCGGTAATTACGTGATCCAGAAACTTCTTGATATAGGCAATGACCGGCATCGGGAAATACTTCTCAATCATATAAGAAATCATATAGATGCTTTGAAGAAATACACATATGGGAAACACATTGTTGCTCTTTATGAACAACTTGTTCGTCCAGCAAGCGAGGCTTAG 2955 0.4105 MATESLMRMVEGSQTSQWLSSKDIPAFGSFWRNKSTEELDIFLKGQKLSQCQADFTPNRSGSAPPSMEGSVAAVGNMLPVKDSSLVSNSRRLSNALGDHKSEGELFDPSNVACCLLELNLDPKLPNQFSNHEKNQGIADSDDGGMVDPYTIEAANIKGSSKLASESLFNPNSMPNPGNNAVLSASLHKSLVDLIQEDFPRTPSPVYNQSHLSSHATTQDSVDVDVQAISSSVSSIDLSNQPDSATCSTGAVVTGILNTDACELTSNQVSLLNFQSLQHADETQNLSVEPSPTNNKDALLKDYVSRDGAVNLEEHKLRASDVRRERQEQQQSYGRNKLNQSFTSDYAYKLQVTGSQFSQGINNSHSYLGMLAYSNLQFSPLGIQSSSPSTGLTGPYYATPTAFMTSGNPFYHDIQPSGFLPPQYRLGGYALGSTSVAPYMVGYSSQGDPLPFEAAGSQDLNGQATNAPLGDGVPHASGFQSHSKICGQYGLPMQPSYANPINMRYFPHTSSDVYPAFHQSQLSSRSLTGGLACSLPSHQDAAVPAYLNGHKFQSSAHGSLTIPSNKNMGISGSSYYGNSNKGVVMQCPPLSCGVSISPSSSIGKINPLGGKIDKKMPHVSVRNAGFSPGQRAIKGFGVTKQQSFLEELKSINHKEFKLSHLAGRVVELSIDQHGSRFIQRKLENCSAEEKASVFEEILPYSSKLVTDVFGNYVIQKFFEHGSPDQRKNLADQLSGQILPLSLQMYGCRVIQKALEVIELDQKTLLVQELDGHVMRCVHDQNGNHVIQKCIECIPVGKIHFIISAFQGQVPALSVHPYGCRVIQRILEHCSDEQCIQFIVDEIMESACVLSQDQYGNYVTQHVLKRGKNERGQIIRKLAGSIVQLSHHKYASNVIEKCLEHGDATEREAMIAEIIGQPGEDHNLLTMMKDQFGNYVIQKLLDIGNDRHREILLNHIRNHIDALKKYTYGKHIVALYEQLVRPASEA 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1537 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 695 730 IPR001313 GO:0003723
Prci12g1537 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 803 839 IPR001313 GO:0003723
Prci12g1537 984 FunFam Pumilio homolog 1 isoform 2 638 983 - -
Prci12g1537 984 CDD Pumilio 660 973 IPR033712 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 735 768 IPR001313 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 880 913 IPR001313 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 703 732 IPR001313 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 848 873 IPR001313 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 921 954 IPR001313 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 663 697 IPR001313 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 778 794 IPR001313 GO:0003723
Prci12g1537 984 Pfam Pumilio-family RNA binding repeat 807 842 IPR001313 GO:0003723
Prci12g1537 984 Coils Coil 311 331 - -
Prci12g1537 984 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 639 978 IPR033133 GO:0003723
Prci12g1537 984 Gene3D - 638 982 IPR011989 -
Prci12g1537 984 SUPERFAMILY ARM repeat 643 974 IPR016024 -
Prci12g1537 984 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 245 976 - -
Prci12g1537 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 767 802 IPR001313 GO:0003723
Prci12g1537 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 659 694 IPR001313 GO:0003723
Prci12g1537 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 731 766 IPR001313 GO:0003723
Prci12g1537 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 875 910 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 659 694 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 840 874 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 695 730 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 767 802 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 917 952 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 875 910 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 803 838 IPR001313 GO:0003723
Prci12g1537 984 SMART pum_5 731 766 IPR001313 GO:0003723
Prci12g1537 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 911 952 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1537 Prci-Chr12 33284267 33293014 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1537 K17943 - qsu:112034336 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1537 12 33284267 33293014 Prci12g1537 12 33284267 33293014 ECH