Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1759 ATGTGCTATGCAACACTAATCCGCTTCCGCCGTTACGCTTCTTCGACTTCTGCATTTTCCCTTTTTCTGCTTCGTAAGGCTCTGCCTTTTGCCTCCTTCTCCTCCGCTTCGCAATCCACATTTCAAGCATCGGCGGCCATGGTGGCTCATGCCAAAGACGAAGTCTATCTCAACACCGTCATCCCCAAGCGCATCCAACTCTTCGAGACCATCATAGCTCAGCAACTCGTTCAACGCCAATCCCTCCCCGCCGATCCCATCAAGATAACTTTGCCGGACAAGAATGTCAAGGAAGGGAAGAAATGGGTGACCTCACCCCTGGATATTGCCAGGGAGATTTCCAAGAATTTGGCTGCTAATGCTTTGATTGCCAAAGTGAATGGGGTCCTATGGGACATGACAAGGCCCTTGGAAGGTGATTGTGAGCTTCAGATTTTCAAATTTGAAGACGATGAAGGACGTGACACTTTCTGGCATTCCAGTGCTCACATTTTGGGGCAGGCCCTTGAGGTGGAGTATGGATGCAAGCTCTGCATTGGACCCTGCACCACTAGAGGAGAGGGATTCTATTATGATGCGTTTTATGGTGACTTGAGTTTGAATGACGATCACTTTAAGCAGATAGAATCTGGGGCTTCAAAGGCTGTTGCGGAGAAACAACCATTTGAACGCATTGAAGTATCAAAGGATCAGGCACTTGAAATGTTTTCTGACAATAAGTTTAAGGTTGAAATCATCAATGATCTGCCTGCAGACAAAACTATCACAGTATACAGATGTGGTCCCTTGGTTGATCTGTGTCGTGGACCACATATACCTAACACATCCTTTGTGAAAGCACTTGCTTGTCTAAAGGCTTCCTCAGCATATTGGAGAGGGGACAAAGACCGAGAAAGTTTGCAGAGAGTTTATGGGATATCTTATCCTGATCAAAAGAGTTTGAAGGAATATATCAACCGGTTGGAGGAGGCTAAAAAGTATGACCACAGATTGTTGGGTGTAAAACAGGAACTTATTCTGCATCATGAGTGGAGCCCAGGAAGTTGGTTTTTTCTTCCCCATGGCACTCGGATTTACAACAAACTGGTGGAATTTATTCGAAATCAATATAGGGAAAGAGGTTACCAAGAGGTTATATCTCCTAATGTTTATAATATGGAGCTGTGGGAGCAATCTGGACATGCTGCAAACTACAAGGAGAATATGTTTGTCTTTGAGATTGAAAAGCAAGAGTTTGGGCTGAAACCAATGAATTGCCCAGGGCATTGCTTGATGTTTAAGCACAGAGTTCGCTCATACAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTTTTACATCGGAATGAGGCTAGTGGTGCCTTGAGTGGATTGACGCGTGTTAGGAGATTCCAGCAGGATGATGCCCATATCTTCTGCAGGGAGTCCCAGGTAAAGGAGGAAGTGAGAGGTGCCTTGGACTTTATCAATTATGCCTATAAAGTATTTGGTTTCACCTATGATCTGAAGCTTTCCACGAGGCCAGAGAAATACCTTGGAGATTTAGCAACCTGGGAGAAGGCTGAAACTGCACTCAAAGAAGCTTTAGATGAGTTTGGAAAGCCTTGGCAGTTAGATGAAGGAGACGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCGTTGAGCAGGAAATTTCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTCAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAAAGACCTGTAATGATACACAGAGCTGTTCTAGGATCTGTTGAGCGCATGTTTGCTATATTATTGGAGCATTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTGTTTGCCCTGTGTCAGAGAAATCACAGTCTTATGCAATTGAGGTGCGAGATAAGATTCATCAAGCAGGTTATTATGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTGCGTGAAGCTCAGTTAGCACAGTATAACTACATACTGGTAGTTGGAGAGGAGGAAGCTAAGACCGGACAGGTAAGTGTGCGGGTTAGAGATAACTCCGACCATAAGGTTATGAGTATTGAGAGCCTCCTCAAACTCTTCATTGATGAAGTCGCAGCTTTCCATTGA 2166 0.4464 MCYATLIRFRRYASSTSAFSLFLLRKALPFASFSSASQSTFQASAAMVAHAKDEVYLNTVIPKRIQLFETIIAQQLVQRQSLPADPIKITLPDKNVKEGKKWVTSPLDIAREISKNLAANALIAKVNGVLWDMTRPLEGDCELQIFKFEDDEGRDTFWHSSAHILGQALEVEYGCKLCIGPCTTRGEGFYYDAFYGDLSLNDDHFKQIESGASKAVAEKQPFERIEVSKDQALEMFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYINRLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYNKLVEFIRNQYRERGYQEVISPNVYNMELWEQSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKEEVRGALDFINYAYKVFGFTYDLKLSTRPEKYLGDLATWEKAETALKEALDEFGKPWQLDEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAVLGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYAIEVRDKIHQAGYYVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDNSDHKVMSIESLLKLFIDEVAAFH 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1759 721 SUPERFAMILY Class II aaRS ABD-related 612 717 - -
Prci10g1759 721 Gene3D - 150 307 - -
Prci10g1759 721 ProSiteProfiles TGS domain profile. 85 147 IPR004095 -
Prci10g1759 721 Pfam TGS domain 87 147 IPR004095 -
Prci10g1759 721 FunFam Threonyl-tRNA synthetase, mitochondrial 151 308 - -
Prci10g1759 721 CDD ThrRS_anticodon 624 713 IPR047246 -
Prci10g1759 721 SMART tRNA_SAD_4 255 304 IPR012947 GO:0004812|GO:0005524|GO:0043039
Prci10g1759 721 NCBIfam threonine--tRNA ligase 158 711 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Prci10g1759 721 CDD ThrRS_core 328 624 IPR033728 -
Prci10g1759 721 FunFam Threonine--tRNA ligase mitochondrial 1 618 721 - -
Prci10g1759 721 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 353 619 IPR006195 -
Prci10g1759 721 FunFam Threonine--tRNA ligase, cytoplasmic 85 146 - -
Prci10g1759 721 Hamap Threonine--tRNA ligase [thrS]. 152 719 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Prci10g1759 721 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 405 614 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Prci10g1759 721 Pfam Anticodon binding domain 626 714 IPR004154 -
Prci10g1759 721 Gene3D Bira Bifunctional Protein; Domain 2 308 616 IPR045864 -
Prci10g1759 721 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 255 304 IPR012947 GO:0004812|GO:0005524|GO:0043039
Prci10g1759 721 SUPERFAMILY ThrRS/AlaRS common domain 150 326 IPR018163 GO:0000166
Prci10g1759 721 SUPERFAMILY TGS-like 87 147 IPR012676 -
Prci10g1759 721 PRINTS Threonyl-tRNA synthetase signature 592 605 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Prci10g1759 721 PRINTS Threonyl-tRNA synthetase signature 548 576 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Prci10g1759 721 PRINTS Threonyl-tRNA synthetase signature 619 631 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Prci10g1759 721 PRINTS Threonyl-tRNA synthetase signature 414 442 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Prci10g1759 721 PRINTS Threonyl-tRNA synthetase signature 447 470 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Prci10g1759 721 PANTHER THREONINE-TRNA LIGASE 58 719 - -
Prci10g1759 721 CDD TGS_ThrRS 87 152 - -
Prci10g1759 721 Gene3D - 617 720 IPR036621 -
Prci10g1759 721 SUPERFAMILY Class II aaRS and biotin synthetases 328 611 IPR045864 -
Prci10g1759 721 FunFam Probable threonine--tRNA ligase, cytoplasmic 443 617 - -
Prci10g1759 721 Gene3D - 85 147 IPR012675 -
Prci10g1759 721 FunFam Threonine--tRNA ligase mitochondrial 1 308 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1759 Prci-Chr10 13243966 13255553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1759 K01868 - gmx:100802879 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1759 10 13243966 13255553 Prci10g1759 10 13243966 13255553 ECH