Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1636 ATGAAGAGAAACAGTAGCAATTCTCTTCTCTTTCTCCTCTTCTTACTGATTCATGTCATTTTGAACTCTTGTATCATTTCTGTGGAAGCAAGGAAGAGTCACACCAAGAACACAAAGCCTCATAAATTTCATAAAGATCATGGCCATGGCCACCTTGCTCATTCTCCAAGCCCTGCCCCACCTCCAACTCAAACTCAAACTCAAACCACCAGTTTTGACGTTCTGTCTTTTGGGGCCAAGGCCAATGGGATTTCTGATGATTCCAAGGCACTCAAAGCAGCATGGGAAGCTGCCTGCAAAGTTGATGGTGCTATAGTGAAAATTCCAGCAGAACACAGGTTCTTAATCAAGCCCATTACTTTACAAGGCCCTTGTATGCCTAACCTTACTCTTCAGATAGATGGAACTCTGATAGCTCCTCCTGCAATATCTTCCTGGCCAAAATCCAGTTTATTTCAGTGGATAAATTTAAAAAACATCCACAGCTTCACCATCCAAGGTTCTGGCACCATTAATGGCCAAGGCTGTAACTGGTGGACCACCTCACAGATTTATCATATGCAGAAGAAGGGATACTATTCTAAACAGATTCCAAGCATGAAACCTACTGCTGTGAGGTTTTATTCCAGCAATGATGTAACAGTTCGTGATATCAAAATCATAAATAGTCCTCTGTGCCATCTAAAGTTCGACAATTCAAAAGGGATCAAAGTCAATAACATTACAATATCTTCCCCAGAAAATAGCCAAAACACTGATGGTATTCACTTACAGAACTCACAGGATGTAGAGATTCAACATTCCAACATCGGAAGTGGAGATGACTGTGTATCCATCCAAACTGGTTGCGCAAATATTCATATTCACCATATTATCTGTGGCCCAGGACATGGTATAAGCGTAGGAGGATTAGGAAAAGACAAAAGTGTGGCATGTGTCTCCAACATCATGGTTAATGATGTTTCAATGCAAAACACATTATATGGAGTAAGGATCAAAACATGGCAGGGTGGTATTGGGATGGTGAAGAATGTGTCATTCTCAAGAGTCCAAGTGCAAGACGTGAAGATTCCAGTAATGGTAGATCAATACTACTGTGACAAGCATGTGTGCAAGAACCAGACAGGAACAGTGGTGATTTCTGGTGTCAATTTTGATAAAATTCATGGGACTTATTCATATCAACCTGTTCATATAGCTTGCAGCAATTCCATACCTTGCACCAACATTGATCTAACTGATATTCAGCTAAGGCCATCACTGAGATACAGAGGTTTTCAACAAGCTTTGTGTTGGAACTCTTATGGGAAATCTCAAGGCAGCCTGCAACCTTCAAGCATTGATTATTGCCTGAGAAGTGGTGGTGGTTATATCAAGAAGATAGCTAGGTCTCATGATAGTTTGTGTTACTAG 1413 0.4091 MKRNSSNSLLFLLFLLIHVILNSCIISVEARKSHTKNTKPHKFHKDHGHGHLAHSPSPAPPPTQTQTQTTSFDVLSFGAKANGISDDSKALKAAWEAACKVDGAIVKIPAEHRFLIKPITLQGPCMPNLTLQIDGTLIAPPAISSWPKSSLFQWINLKNIHSFTIQGSGTINGQGCNWWTTSQIYHMQKKGYYSKQIPSMKPTAVRFYSSNDVTVRDIKIINSPLCHLKFDNSKGIKVNNITISSPENSQNTDGIHLQNSQDVEIQHSNIGSGDDCVSIQTGCANIHIHHIICGPGHGISVGGLGKDKSVACVSNIMVNDVSMQNTLYGVRIKTWQGGIGMVKNVSFSRVQVQDVKIPVMVDQYYCDKHVCKNQTGTVVISGVNFDKIHGTYSYQPVHIACSNSIPCTNIDLTDIQLRPSLRYRGFQQALCWNSYGKSQGSLQPSSIDYCLRSGGGYIKKIARSHDSLCY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1636 470 Gene3D - 59 455 IPR012334 -
Prci10g1636 470 MobiDBLite consensus disorder prediction 35 49 - -
Prci10g1636 470 PANTHER - 70 437 - -
Prci10g1636 470 FunFam polygalacturonase At1g48100 60 453 - -
Prci10g1636 470 SUPERFAMILY Pectin lyase-like 63 447 IPR011050 -
Prci10g1636 470 MobiDBLite consensus disorder prediction 35 68 - -
Prci10g1636 470 SMART pbh1 260 281 IPR006626 -
Prci10g1636 470 SMART pbh1 283 303 IPR006626 -
Prci10g1636 470 SMART pbh1 313 334 IPR006626 -
Prci10g1636 470 SMART pbh1 233 259 IPR006626 -
Prci10g1636 470 Pfam Glycosyl hydrolases family 28 106 418 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1636 Prci-Chr10 12006596 12010566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1636 1 469 Glycoside Hydrolase AT3G26610 61.006 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1636 K01213 - qsa:O6P43_025265 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1636 10 12006596 12010566 Prci10g1636 10 12006596 12010566 ECH