Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1499 ATGTTACAAGCTAGGTATTCAGATTCTGTTCTTGGCGGAATACCCCCCGGCGGCCCTGCAACGATTTCGGAGGGAGCTATTACTGGGTCTTCACCGTCTTCGCATTCTTCAAGTCTTGATGACCGTTCTTTGGTTCCATATGTATCAAATCAAATGGGATTTTCAGCGTCTTTATCCAATGAAGCCCCAGGGGAGCGGATTAATACGTCTTTACCGTCCAATATAAGTATGTCTCATCCCTATTTAGGTTCCAAAACCCTAGATGAATGTTCACCTTCTGCGTCGATAGAAATCTCAGCGCCTTTGGTGCCTCAGTCATCAACTCCTGACGAGTCGTCACTGGCCATGGCAACGGCTGCCGACAACAATTATTACCTCGCACTCCGTGATTCCAGTAGAGAAGATCGAGATGATGGTCCAGAGCCAATTCGATCGGTAAACGATTTATCATATTATCCGGCTGTATCATCTCCCAAGCAGTGGCCTTCGTGGCCCTCATCTTCACAGTTGCCCCCTAAAGAAGCTTGGAATTCCGAGCTTTCTTCCGATGAAATCTTGGTTCCATCTGGAGATACTGGCACGCCTTTGAACAATGGGTTTACTGCTTCGGGAATTGTACCCTTCACGGTGGGTTCTGGGCTTGAAAATCTTGGCAACACTTGCTTTTTCAATGTTATCTTGCAATGCCTCACACATACTGTGCCACTAATTTGGGGTCTTTGGACTTGCAGTCATGCTGCACCTTGTGAAAGTGCTAATGGTGGATTCTGTGTTGTCTGCGTTCTTCGTGATCACATCGGACTTTCGTTGAAGTCTTCTGGAAGAATTCTCTCACCTTTGAAACTTGTTGACAATTTGAATTACTTTTCTTCTTTTTTTACAAGATACCAGCAGGAGGATGCCCATGAATTCCTGCAGTGCTTCTTAGATAAACTGGAAATATGCTTTCTAGATTTAAAGAGAAATAGCAAGAGTTGTGAACAAGTTGACAATCTAGTGGAGAAAATATTTGGAGGTCGCCTCATGAGCAAACTCCAATGTTGTAACTGTGGTCACTGTTCAGACACTTATGAGCCTCTCATCGACTTCAGCTTGGAGATAGAAAATGTGGACAGCCTTCCAAGTGCTTTAGCGTCTTTCACTAAGGTAGAAAAGATAGATGCTAAGTTTATATGTGATAGCTGCAAGGAAGAAGTATCCATGGAGAAGAGGCTTATTTTGGATCAGACACCTTCAGTTGCAACATTTCATTTAAAGAGATTTAAGACAGATGGGATACATGTTGAAAAGATTGATAATCATGTGGATTTCCCTCTAGAATTGGACTTGCAGCCTTATACTAATTGTAACCAGAGCAATAATGAAGCACTGAAATATGACCTATATGCCATTGTTGTGCATGTTGGGTTTTCATCTACGTCTGGTCATTACTTTTGCTTTGTCCGCACTGCACCTGGCATGTGGTATAGGTTGGATGACTCTAAGGTTAACAGAGTTGCAGAAGGTTTTGTGCTGTCTCAGGAAGCATACATATTACTCTATGCACGACGGGGTACACCATGGTTATCTACTATAATGGATGCTTCAAGCCCCTGCTGGGCCCCAAGTGTTCTGAATACTTCTCCAAAGTCAGTTTTAGACAATGTTGATGGCTTGTATCGCCCTGATCCTAATGAAGCAGATTTTGCTAGTGGTGGTGCAAATGAATCCAAAGGAGATTCCCAGCAGATGCCTGTTTATTCTAGTGGAGGATTTAATGAAATCCTCAATGGTTATATGGATTCTTATCTTGAAGATGGACAAGTTCACTTTGAGTCAAATCCAGCTACTATTAGTTCTAATGGCTCTAAAGAAGAAACCGCTCATGTACAAGTGCCATGCAATGAGAGAAATGGTACCCTGCCCTCACTTGACGAAAAAGGTCATCAGGCTACTGTTGATATTAAAGAGAACGTTTTTCATCCTTTGACTCCACCCAGCTCCCCAGGTCCAGATTCTAATTCTCCAGATATTACTTGCCACATTCCGCGGGATCATTTGAAGATGGAGAATCATGAGAGGTGTAAAAGACCATTTAATAAGACTGTGGACGATTCTGAGAGGAAAGAAGCTGTGAGATATCTTAGCAAGAACGTGCATGGTTCGAGGAGATCAAAACTCCTTGGTGCCATGGCTGGGCCTTCCCAGGAAAGTTATTCTATCAAAAAGAGGAAGAAATTGGGTTCTCAACCGTGTAAGAAATCCATACCTCCTGGTGACCGTAAGAAATCAAATCATGGTTCTGTCATGTGTGCTTCAAGATAA 2304 0.4297 MLQARYSDSVLGGIPPGGPATISEGAITGSSPSSHSSSLDDRSLVPYVSNQMGFSASLSNEAPGERINTSLPSNISMSHPYLGSKTLDECSPSASIEISAPLVPQSSTPDESSLAMATAADNNYYLALRDSSREDRDDGPEPIRSVNDLSYYPAVSSPKQWPSWPSSSQLPPKEAWNSELSSDEILVPSGDTGTPLNNGFTASGIVPFTVGSGLENLGNTCFFNVILQCLTHTVPLIWGLWTCSHAAPCESANGGFCVVCVLRDHIGLSLKSSGRILSPLKLVDNLNYFSSFFTRYQQEDAHEFLQCFLDKLEICFLDLKRNSKSCEQVDNLVEKIFGGRLMSKLQCCNCGHCSDTYEPLIDFSLEIENVDSLPSALASFTKVEKIDAKFICDSCKEEVSMEKRLILDQTPSVATFHLKRFKTDGIHVEKIDNHVDFPLELDLQPYTNCNQSNNEALKYDLYAIVVHVGFSSTSGHYFCFVRTAPGMWYRLDDSKVNRVAEGFVLSQEAYILLYARRGTPWLSTIMDASSPCWAPSVLNTSPKSVLDNVDGLYRPDPNEADFASGGANESKGDSQQMPVYSSGGFNEILNGYMDSYLEDGQVHFESNPATISSNGSKEETAHVQVPCNERNGTLPSLDEKGHQATVDIKENVFHPLTPPSSPGPDSNSPDITCHIPRDHLKMENHERCKRPFNKTVDDSERKEAVRYLSKNVHGSRRSKLLGAMAGPSQESYSIKKRKKLGSQPCKKSIPPGDRKKSNHGSVMCASR 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1499 767 MobiDBLite consensus disorder prediction 718 767 - -
Prci10g1499 767 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 213 228 IPR018200 GO:0004843|GO:0006511
Prci10g1499 767 FunFam Ubiquitin carboxyl-terminal hydrolase 20 208 520 - -
Prci10g1499 767 MobiDBLite consensus disorder prediction 55 75 - -
Prci10g1499 767 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 212 517 IPR028889 -
Prci10g1499 767 MobiDBLite consensus disorder prediction 1 41 - -
Prci10g1499 767 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 113 517 - -
Prci10g1499 767 Pfam Ubiquitin carboxyl-terminal hydrolase 213 514 IPR001394 GO:0004843|GO:0016579
Prci10g1499 767 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 459 477 IPR018200 GO:0004843|GO:0006511
Prci10g1499 767 MobiDBLite consensus disorder prediction 24 41 - -
Prci10g1499 767 Gene3D Cysteine proteinases 211 519 - -
Prci10g1499 767 MobiDBLite consensus disorder prediction 557 576 - -
Prci10g1499 767 SUPERFAMILY Cysteine proteinases 208 516 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1499 Prci-Chr10 10187889 10192005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1499 213 516 Miscellaneous Gene Families AT2G24640 36.218 1.31e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1499 K11855 - cave:132176464 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1499 10 10187889 10192005 Prci10g1499 10 10187889 10192005 ECH