Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1467 ATGGTTGTATATCCATGTCGACAAGATATGGAGTTGAGTCCGCTTTGCTCCAGAGCAAAGTGCTCTCTTACAAAACAACGGTTACTTAGATTGTATTATGCTGCTTCTTCGGCAGTGATGTTGGAAGACCCTGTGTTTGATGTAAGTCCTAGAGTAGATTATGCCAATGTAATGGTCAATTTTGGAAGAAACAGCGTGAGACCTTCAATTCTTCAAAGAAAGCGTAGTTTATTTCCTATAGTTGTCTCGGTGATTAAAACCTCAAATTGGGAGGCTGAACTTGCAAAAGATAAAATGTTCTGGAAAGCTGAAGGCCAAGTTCGATACATTCAAATTGTTTCTGACTTTGTTAGATTCACCTCAGCATGTGGAACGATCAATTGTGTGTGTGACATGCTTATAAAAGTACTTGCATCCTATTCCATGCTTGATGATTCATTTGATGTGTTCATGAGAATTAAGCATTTGGGGTTTGAACCTGGTGTATTTTCATGCAATTTCTTGTTGAAATGCTTGGTAGAAACAAACAGGGTGGAGTTGGTTGGAAAATTATATGAAGAGCTAAAAATCTCAGGTCCATCACCAAATATCTACACCTATACAATTATGATGAGCTTCTACTGTAGAGGAGATTGTGGGCAGGATGTAGATATTAACCAAGCAACTGGGATTTTTGAAGAAATATTTAGGAGTGGGGAAAATCCCACCGTTTTCACATATAGTATTTATATTCGTGGACTTTGTAAACTTGGTTCTGTTGCTGCCGCTCTGCAATTTATTCGTGAATGTAGTTCACGAAGCTTTGCAAGTCTTGCAAGAAATGCGGAGCTTAGGAGTATTGCCCGATGTTTGCAGCTACAGTATATTAATCCATGCATTTTGCAAAAAGGGGATATAGAAAAAGGTCTTGACTTGATTGAGGAAATGGAACTCTATAATTTAGAACCATCCATAATTAGCTATACCTCCCTTATCTATGGTCTATGCAAGAGTAAGTTGATGGATGTTTCAATGTCTATGTTTCGGAACATTGGTGCTTTTGGATGCAAATTTGATCATGTTGCTTATGAAACTTTAATCAATGGATTTTGCTGTGGAGGTGATATGGATTCAGCCAAAAAGCTTATGGAGGAGATGATTGCTAATGATCTGGCTCCTACTTCTTTTGGTTTCCAGAGTATAATTGGAGGATTCTACAAACTGGGACTCTTAGACAAGGCATTGGAAGCTTTATATTCCATGCTTCAAGGCGGTGTCTTGCCAAATACCATCACTTGCAATTTTATTATTGATGGACTCTGCAGAGAAGGCCGTTTCATGGAAGCCTTGACACTACTGGAAAGGTTCCAAGACCAAGGAATTGACCTAAACTCACGTTCATATAATGCTGTCATCTACAGGCTGTGCAAGGGAAGACATTTAAAAAGGGCATGGGAGCTCCTTCCAAGAATGATGAAAAGGAATGTACTTCCAGGAGTTGTTAATTATACAACTCTCATAGATGCTTTTGCCAAACAATCAAATCTGAAGAAGGCCTTATGGTTATACACAAAAATGCTGAAAGTTGGAGTCACTCCCAACACCATCACTTATACAGTCCTTATTAACACCTATTGCCGAGTGGGCAGAATGCGTGAAGCATTTGGTTTTTACAAGAAAATGATAGAAAATGGTTTGAATCCAGATCATATTTCGTTTACATCTTTAATAACTGGTTGTTGTCGTACTGGACACATGAGAAGGCCTGGAAAAGCAGTTACTCCTAGTGTTGTCACTTACACTGTTCTCATTGATTGGTGCCGTAAACATGGATATGCAGATCAGGCGCATAGGCTGTATCGTGAGATGAGAGTAAAGGGTATTTCACCAGATGATATAACTCACAGGGTTCTTCCGTGA 1899 0.3907 MVVYPCRQDMELSPLCSRAKCSLTKQRLLRLYYAASSAVMLEDPVFDVSPRVDYANVMVNFGRNSVRPSILQRKRSLFPIVVSVIKTSNWEAELAKDKMFWKAEGQVRYIQIVSDFVRFTSACGTINCVCDMLIKVLASYSMLDDSFDVFMRIKHLGFEPGVFSCNFLLKCLVETNRVELVGKLYEELKISGPSPNIYTYTIMMSFYCRGDCGQDVDINQATGIFEEIFRSGENPTVFTYSIYIRGLCKLGSVAAALQFIRECSSRSFASLARNAELRSIARCLQLQYINPCILQKGDIEKGLDLIEEMELYNLEPSIISYTSLIYGLCKSKLMDVSMSMFRNIGAFGCKFDHVAYETLINGFCCGGDMDSAKKLMEEMIANDLAPTSFGFQSIIGGFYKLGLLDKALEALYSMLQGGVLPNTITCNFIIDGLCREGRFMEALTLLERFQDQGIDLNSRSYNAVIYRLCKGRHLKRAWELLPRMMKRNVLPGVVNYTTLIDAFAKQSNLKKALWLYTKMLKVGVTPNTITYTVLINTYCRVGRMREAFGFYKKMIENGLNPDHISFTSLITGCCRTGHMRRPGKAVTPSVVTYTVLIDWCRKHGYADQAHRLYREMRVKGISPDDITHRVLP 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Prci10g1467 632 Pfam PPR repeat 348 379 IPR002885 -
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Prci10g1467 632 Gene3D Tetratricopeptide repeat domain 291 381 IPR011990 GO:0005515
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Prci10g1467 632 SUPERFAMILY TPR-like 427 562 IPR011990 GO:0005515
Prci10g1467 632 PANTHER ATPASE EXPRESSION PROTEIN 3 294 579 - -
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Prci10g1467 632 Gene3D Tetratricopeptide repeat domain 581 631 IPR011990 GO:0005515
Prci10g1467 632 Gene3D Tetratricopeptide repeat domain 113 290 IPR011990 GO:0005515
Prci10g1467 632 Gene3D Tetratricopeptide repeat domain 382 469 IPR011990 GO:0005515
Prci10g1467 632 Gene3D Tetratricopeptide repeat domain 470 580 IPR011990 GO:0005515
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 235 IPR002885 -
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Prci10g1467 632 NCBIfam pentatricopeptide repeat 496 528 IPR002885 -
Prci10g1467 632 NCBIfam pentatricopeptide repeat 591 624 IPR002885 -
Prci10g1467 632 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Prci10g1467 632 NCBIfam pentatricopeptide repeat 529 562 IPR002885 -
Prci10g1467 632 NCBIfam pentatricopeptide repeat 424 457 IPR002885 -
Prci10g1467 632 NCBIfam pentatricopeptide repeat 354 387 IPR002885 -
Prci10g1467 632 NCBIfam pentatricopeptide repeat 460 492 IPR002885 -
Prci10g1467 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Prci10g1467 632 Pfam PPR repeat 393 419 IPR002885 -
Prci10g1467 632 Pfam PPR repeat 564 580 IPR002885 -
Prci10g1467 632 Pfam PPR repeat 238 264 IPR002885 -
Prci10g1467 632 Pfam PPR repeat family 421 470 IPR002885 -
Prci10g1467 632 Pfam PPR repeat family 491 540 IPR002885 -
Prci10g1467 632 Pfam PPR repeat family 588 631 IPR002885 -
Prci10g1467 632 Pfam PPR repeat family 160 209 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1467 218 631 Glycosyltransferase AT1G05670 27.294 2.34e-47 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1467 - - pcin:129322075 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1467 10 9878588 9880807 Prci10g1467 10 9878588 9880807 ECH