Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1245 ATGCCTGGTTTGGTATCCGTTAAAACGCCACCGGACGCTACTCCGCTTCGAATCGCAGTGCCGGAAGCTCAAACTCCACAGAGATCTGACTCCTCTAACGTCAAAACACCGTCTCCACTTCCCAAGAGACCACCTTCTCCGTCACCTTCCCGTGCCAAACCCTCGCCGGATCGCAAAAAGAAGCTCCTTGATTCCCCTAATCCAGCTCTTTCCGAGGCTTCCCTTGACAACCCCGATCTCGGTCCTTTCCTTCTCAAGCTCGCCCGAGATACTATCGCCTCCGGCGAAGGTCCTGCCAAGGCTCTTGACTATGCCATTCGGGCTTCCAAATCTTTCGAGCGATGTGCGGTCGAAGGGGAGCCCAGCTTGGACCTTGCCATGAGTTTGCACGTCCTGGCAGCTATATACTGTAGCTTAAGCAGGTTTGAGGAGGCCGTGCCGGTGCTCGAGCGGGCGATCCAGGTTCCCGACGTCGCCAGGGGTGCGGATCACGCTCTTGCTGCTTTCTCTGGTTATATGCAATTGGGGGATACCTTCTCTATGCTTGGGCAAGTCGACAAGTCGATCTCATGCTATGACGAAGGCCTGAAAATTCAGATCGAAGCATTGGGTGAGACGGATCCAAGAGTCGGAGAAACTTGCAGATACTTAGCTGAGGCCAACGTTCAAGCAATGCAGTTTGATAAAGCAGAGGAACTGTGCAAAAAAACTCTTGAGATTCACCGAGCACACAGTGAACCTGCATCTCTTGAAGAAGCAGCAGATAGAAGGCTTATAGCACTTGTATGCGAGGCAAAGGGAGATTATGAGTCAGCTCTTGAGCACCTTGTCCTTGCCAGCATGGCAATGATTGCAAATGGACAAGACAATGAAGTTGCTTCCATTGATGTCAGTATTGGGAACATCTATATGTCTCTTTGTCGCTTTGATGAAGCTATCTTCTCCTACCAGAAGGCCCTTACTGTCTTCAAATCATCAAAGGGGGAAAACCATCCTTCAGTGGCATCTGTTTTTGTACGCCTTGCTGATTTGTATCACAGAACTGGAAAATTAAGAGAGTCCAAATCCTATTGTGAAAATGCTCTAAGAATATATTCAAAACCTGTTCCTGGAACGACACCAGAAGAGATAGCTACTGGGTTGACAGAAGTTTCAGCCATTGAATCTGTGGATGAGCCAGAAGAGGCTCTGAAACTCCTGCAAAAGGCAATGAAATTATTGGAGGATAAGCCAGGGCAGCAGAGCACAATTGCTGGCATAGAAGCACGAATGGGTGTGATGTTTTACATGATTGGGAGGTATGAAGAAGCAAGGAACTCTTTTGAGAGTGCTGTGGCAAAACTTAGAGCCAGTGGGGAAAGGAAGTCTGCCTTTTTTGGGGTTGTTTTGAACCAGATGGGATTGGCATGTGTACAACTATTCAAGATAGATGAGGCTGCTGAACTATTTGAAGAAGCTAGGGCAATTCTTGAACAGGAGTGTGGTCCATGCCATCAAGATACTCTTGGTGTATATAGCAATCTTGCTGCAACTTATGATGCTATGGGAAGAGTGGGAGATGCAATTGAGATCTTGGAGTATGTCCTTAAATTGAGGGAAGAAAAGCTAGGAATAGCAAATCCTGATTTTGAGGATGAGAAGCGAAGGCTGGCTGAGCTTCTGAAAGAAGCAGGCAAGACACGAGACAGGAAAGCGAAATCTCTGGAAAATCTCATCGATCCCAGCTCAAAGAGGACAAGGAAGGAAGGGGCAAAGAGGTGGCCAGGCTTGGGTTTTAGAATTTAA 1785 0.4779 MPGLVSVKTPPDATPLRIAVPEAQTPQRSDSSNVKTPSPLPKRPPSPSPSRAKPSPDRKKKLLDSPNPALSEASLDNPDLGPFLLKLARDTIASGEGPAKALDYAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLSRFEEAVPVLERAIQVPDVARGADHALAAFSGYMQLGDTFSMLGQVDKSISCYDEGLKIQIEALGETDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRAHSEPASLEEAADRRLIALVCEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTPEEIATGLTEVSAIXESVDEPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYMIGRYEEARNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARAILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPSSKRTRKEGAKRWPGLGFRI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1245 595 Gene3D Tetratricopeptide repeat domain 71 168 IPR011990 GO:0005515
Prci10g1245 595 ProSiteProfiles TPR repeat profile. 293 326 IPR019734 GO:0005515
Prci10g1245 595 MobiDBLite consensus disorder prediction 566 591 - -
Prci10g1245 595 Coils Coil 544 564 - -
Prci10g1245 595 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 455 572 - -
Prci10g1245 595 SMART tpr_5 169 202 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 378 411 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 419 452 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 126 159 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 211 244 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 253 286 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 503 536 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 335 368 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 293 326 IPR019734 GO:0005515
Prci10g1245 595 SMART tpr_5 461 494 IPR019734 GO:0005515
Prci10g1245 595 SUPERFAMILY TPR-like 168 366 IPR011990 GO:0005515
Prci10g1245 595 Gene3D Tetratricopeptide repeat domain 169 279 IPR011990 GO:0005515
Prci10g1245 595 MobiDBLite consensus disorder prediction 38 52 - -
Prci10g1245 595 SUPERFAMILY TPR-like 77 198 IPR011990 GO:0005515
Prci10g1245 595 Gene3D Tetratricopeptide repeat domain 280 461 IPR011990 GO:0005515
Prci10g1245 595 MobiDBLite consensus disorder prediction 566 589 - -
Prci10g1245 595 Gene3D Tetratricopeptide repeat domain 462 572 IPR011990 GO:0005515
Prci10g1245 595 MobiDBLite consensus disorder prediction 1 75 - -
Prci10g1245 595 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 33 577 - -
Prci10g1245 595 Pfam Tetratricopeptide repeat 292 366 - -
Prci10g1245 595 Pfam Tetratricopeptide repeat 463 535 - -
Prci10g1245 595 SUPERFAMILY TPR-like 420 561 IPR011990 GO:0005515
Prci10g1245 595 Pfam MalT-like TPR region 130 277 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1245 Prci-Chr10 8187962 8192052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1245 171 338 Glycosyltransferase AT3G04240 24.571 5.43e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1245 - - mnt:21391217 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1245 10 8187962 8192052 Prci10g1245 10 8187962 8192052 ECH