Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1176 ATGACCCAGCTCGCAAAATTCATTCCCCTGTCTCCTTTTCTCCTTTTTCTATGCTTACCACTTGCTCTTGCCGCTCATGACTACGGCCAGGCTCTGAGCAAGAGCATTATCTTCTATGAAGCTCAGAGATCTGGCATTCTCCCCCACAGCCAGAGAGTGACATGGAGGGGTCATTCTGGTTTGCACGACGGCAAGGCAAGTGGGGTAGATCTAGTTGGCGGGTACTATGATGCAGGGGACAATGTGAAGTTTGGTTTGCCCATGGCATTCACAGTTACAATGATGTCGTGGAGCGTGATAGAGTATGGCAAGCAAATGGCTGCAAACGGCGAGCTTGGCCATGCCATGGATGCTATAAAGTGGGGTACTGACTACTTCATCAAAGCCCACCCTGAACCTAATGTTCTCTACGGAGAGGTGGGAGACGGTAACAGTGACCATTACTGTTGGCAAAGACCGGAGGACATGACCACCGACCGGAGGGCCTACAAGATCGACTCCAGGAATCCCGGGTCGGATCTCGCCGGAGAATCAGCCGCCGCCATGGCCGCCGCATCCATTGTCTTCCGACGCTCGAATCCTTCTTACGCCGCCGAGCTGCTTCGCCATGCCTACCAGCTGTTTGACTTTGCGGACAAATACAGAGGCAAGTACGACAGCAGCATCAATGTGGCCCAAAAGTATTACCGATCTATCAGTGGCTACAACGACGAATTACTGTGGGCTGCTGCATGGTTGTACCAAGCAAGTAACAAGAAGTATTACTTGGATTACCTCGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGTCCATGAATGAATTTGGATGGGACGTCAAGTATGCTGGGGTTCAGACTCTAGTTGCCAAGTTCTTGATGCAAGGCAGAGCCGGTCATAATGCAGTAGTGTTTGAGAAATACCAACAGAAAGCAGAGAACTTCATGTGCTCATGCCTTGGAAAGGGCACTCGCAACATGCAGAAGACACCCGGTGGTCTGATTTTCCGGCAGAGATGGAACAACATGCAGTTTGTGACAAGCGCCTCCTTCTTAGCCACTGTTTACTCAGACTACCTGGCATCTTCCGGCAGATACTTGAGATGTCCTTCCGGCAATGTCCCTCCAACTCAGCTTCTGTCCCTGGCCAAATCTCAGGTTGACTACATTCTCGGAGACAACCCAAGAGGCACCAGTTACATGGTGGGCTATGGAACCACCTTCCCTCAAAGGGTTCACCACAGGGCCTCCTCCATTGTGTCCTTTAAGGTTAATCCTACATTTGTCACATGCCGTGGAGGTTATGCCACTTGGTTTAGCAGGAAAGCAAGCGACCCCAATCTGCTTGTTGGTGCACTTGTTGGTGGACCTGATGCTTATGACAACTTTGCTGATGAAAGAGATAATTATGAGCAAACAGAGCCTGCCACCTACAACAATGCTCCTCTCATTGGTATCCTAGCCCGTTTGAGTGCTGGCCATGGTTCCTATAACCAGCTACTTCCAGTTGCTCTTCCAGCTCCTAAACCTGTCATCACCAAACCACAACCAGCTCCCAAACCTAAGGTCACTCCAGCTCCAGCTTCATCTTCAGGTCCAATTTCGATTCAACAGAAGATGACCACTTCATGGGTTGCCAGTGGAAGAACTTACTCCAGGTACTCAACTGTGGTGACCAACACAACTCCCAAAACTCTCAAGTCTCTCAACCTCTCGATATCCAAGCTTTATGGTCCAATCTGGGGCCTCACAAAGTCAGGTGATTCCTACACTTTCCCATCATGGCTCAACTCTCTATCAGCTGGTAAGAGCCTCGAGTTCGTCTACATTCATGCCGCTTCTGCAGCAGACGTCTCTGTTGCCAACTACATGCTGGCGTGA 1881 0.5019 MTQLAKFIPLSPFLLFLCLPLALAAHDYGQALSKSIIFYEAQRSGILPHSQRVTWRGHSGLHDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSVIEYGKQMAANGELGHAMDAIKWGTDYFIKAHPEPNVLYGEVGDGNSDHYCWQRPEDMTTDRRAYKIDSRNPGSDLAGESAAAMAAASIVFRRSNPSYAAELLRHAYQLFDFADKYRGKYDSSINVAQKYYRSISGYNDELLWAAAWLYQASNKKYYLDYLGRNGDSMGGTGWSMNEFGWDVKYAGVQTLVAKFLMQGRAGHNAVVFEKYQQKAENFMCSCLGKGTRNMQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGRYLRCPSGNVPPTQLLSLAKSQVDYILGDNPRGTSYMVGYGTTFPQRVHHRASSIVSFKVNPTFVTCRGGYATWFSRKASDPNLLVGALVGGPDAYDNFADERDNYEQTEPATYNNAPLIGILARLSAGHGSYNQLLPVALPAPKPVITKPQPAPKPKVTPAPASSSGPISIQQKMTTSWVASGRTYSRYSTVVTNTTPKTLKSLNLSISKLYGPIWGLTKSGDSYTFPSWLNSLSAGKSLEFVYIHAASAADVSVANYMLA 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1176 626 MobiDBLite consensus disorder prediction 512 526 - -
Prci10g1176 626 SMART CBM49_2 534 614 IPR019028 GO:0030246
Prci10g1176 626 Pfam Carbohydrate binding domain CBM49 534 611 IPR019028 GO:0030246
Prci10g1176 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Prci10g1176 626 Gene3D - 24 494 IPR012341 GO:0005975
Prci10g1176 626 MobiDBLite consensus disorder prediction 512 534 - -
Prci10g1176 626 FunFam Endoglucanase 24 495 - -
Prci10g1176 626 Pfam Glycosyl hydrolase family 9 28 487 IPR001701 GO:0004553|GO:0005975
Prci10g1176 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Prci10g1176 626 SUPERFAMILY Six-hairpin glycosidases 25 500 IPR008928 GO:0005975
Prci10g1176 626 PANTHER ENDO-1,4-BETA-GLUCANASE 20 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1176 Prci-Chr10 7881912 7886420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1176 4 626 Glycoside Hydrolase AT1G64390 77.083 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1176 K01179 - gmx:732598 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1176 10 7881912 7886420 Prci10g1176 10 7881912 7886420 ECH