Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0418 ATGGTATCCGAATCGGAGCTTATCGGTCGGCTCCGGGAGTTTCTTCGCAGCTCCGACCTCAACACTACCACCACTGCTACGGTCCGCCGCCAGTTGGAGAAGGATTTTGGAATCGATTTATCGGATAGGAAGGCGTTCATTAGGGAACAGGTTGACTTGTTCCTTCAAAGCGAGCACGAGAAACCCGAGGAACCGGCAGATGAAGAAGATCAAAAAGACGACCCTCAGCCGGAGCATGAATCAGAAGAAAGAGAAGATTCGAATGATGAAATGCAAGACGATGAAGAAAGAAATGAAGATAAAGTAAAGCGTTCCAGGAATGGGAAGGACAAAGGACGATCTAAAAATTCTGGAACTGAGGTACGAAGGAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTTTCTCCACAACTTCAGGAATTCATTGGAGCGCCAGAAATGGCAAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATAAGGGAGAAGAATTTGCAAGATGCGAATAACAGGCGGAATATAATTTGCGATGAACCATTACGTGCCCTTTTTGGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCATTGTCAAAGCATATATGGCCATTGGATTCTGATGATGTCATCCAAGTGAAGTCTACACCGAAGGAAAAGCAGAAGAAGCAAGAGAGAGAAGAAGATTCAGATGAACCAAAAAGAAAGGAAAAACGACAGAAGGGAGGAAAATCAGGGTTTCTTGCTCCTCTTCAACTGTCTGATGCCCTTGTACACTTTCTTGGTACTGGAGAAAATGCATTATCGCGGGCTGATGTCATAAAAAGAATGTGGGATTACATAAAACAAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATTTGTGATGAGAAGCTGAAAGAACTCTTTGACGTTGACTCCTTCAATGGTTTCACAGTTTCGAAACTACTGGCTCCTCATTTCATAAAGGCAGAGCGGTGA 987 0.4306 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEKDFGIDLSDRKAFIREQVDLFLQSEHEKPEEPADEEDQKDDPQPEHESEEREDSNDEMQDDEERNEDKVKRSRNGKDKGRSKNSGTEVRRKGGGFCKLCSLSPQLQEFIGAPEMARTEVVKQLWAYIREKNLQDANNRRNIICDEPLRALFGVDSINMFQMNKALSKHIWPLDSDDVIQVKSTPKEKQKKQEREEDSDEPKRKEKRQKGGKSGFLAPLQLSDALVHFLGTGENALSRADVIKRMWDYIKQNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVSKLLAPHFIKAER 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0418 328 ProSiteProfiles SWIB/MDM2 domain profile. 127 204 IPR003121 -
Prci10g0418 328 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 207 - -
Prci10g0418 328 MobiDBLite consensus disorder prediction 213 246 - -
Prci10g0418 328 Pfam SWIB/MDM2 domain 250 323 IPR003121 -
Prci10g0418 328 Pfam SWIB/MDM2 domain 131 202 IPR003121 -
Prci10g0418 328 Pfam DEK C terminal domain 2 55 IPR014876 -
Prci10g0418 328 SMART swib_2 247 328 IPR019835 -
Prci10g0418 328 SMART swib_2 128 207 IPR019835 -
Prci10g0418 328 MobiDBLite consensus disorder prediction 56 121 - -
Prci10g0418 328 Coils Coil 84 104 - -
Prci10g0418 328 SUPERFAMILY DEK C-terminal domain 3 56 - -
Prci10g0418 328 SUPERFAMILY SWIB/MDM2 domain 124 206 IPR036885 -
Prci10g0418 328 CDD SWIB-MDM2_like 251 323 - -
Prci10g0418 328 MobiDBLite consensus disorder prediction 96 120 - -
Prci10g0418 328 Gene3D SWIB/MDM2 domain 122 210 IPR036885 -
Prci10g0418 328 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Prci10g0418 328 ProSiteProfiles SWIB/MDM2 domain profile. 246 325 IPR003121 -
Prci10g0418 328 Gene3D SWIB/MDM2 domain 241 328 IPR036885 -
Prci10g0418 328 CDD SWIB-MDM2_like 132 202 - -
Prci10g0418 328 Gene3D - 1 59 - -
Prci10g0418 328 MobiDBLite consensus disorder prediction 213 243 - -
Prci10g0418 328 FunFam Upstream activation factor subunit 122 210 - -
Prci10g0418 328 SUPERFAMILY SWIB/MDM2 domain 244 325 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0418 Prci-Chr10 2761077 2765900 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Prci10g0418 SWIB 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0418 K15223 - gmx:100786835 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0418 10 2761077 2765900 Prci10g0418 10 2761077 2765900 ECH