Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0312 ATGCGCAATCCACTGGCAGCACAGATAGAGCACAGGCCTCAGAGGATCCATTTGGAGAAAGAGGAAAGGAAGAAAATGAAGTGCCCTTACTGTGCGGCGGCTCAAGGGCGTAGCGCCACCACCAGCTCTGCCCGCTTCATATCAGAGTGCACATCTTGCGGCCGAGTTGTTGAAGAGCGACAATCCCATCCTCACCATCTCTTCCACCTCCGCGCACAAGACAATCCTCTCTGTCTTGTCACTCCGGACCTCCCCTCCATCCAATCCTTCCATCAGAGCCAGGACGATGATGACCCCTTCGAGCCCACAGGCTTCATCACTGCATTTTCCACTTGGTCCCTCGAGCCCAGCCCTCTCTACCTCCAGTCCTGTCTCTCATTCTCTGGTCACCTCGCCGAGCTTGAGAGGGTTCTCGAGTCGTCCTCGTCTTCATCCTCGTCCTCGACACCATCGTCTTCAACTTCGTCGACGGTTGTGGTTGACAATTTGAGGGCGTACATGCAGATTATTGATGTCGCGTCGATACTTGGGTTGGACTACGATATCTCGGACCATGCGTTTCAATTATTCAGGGATTGTTGTTCGGCTACTTGTTTGAGAAATCGGAGTGTCGAAGCGCTTGCCACTGCTGCTCTTGTTCAGGCAATTAGAGAGGCTCAAGAACCTCGAACCCTTCAGGAAATTTCAATTGCAGCCAATGTGCCACAAAAGGAAATTGGGAAATACATCAAGATATTAGGGGAGGCTTTGCAGCTCAGTCAACCTATTAATAGCAATTCTATCTCAGTCCATATGCCTAGATTTTGTACCCTTCTACAGCTTAATAAATCTGCTCAGGAACTGGCTACTCACATAGGAGAGGTTGTGATCAACAAATGCTTCTGCACACGCAGGAATCCTATTAGCATTTCAGCCGCTGCTATATACCTGGCCTGCCAACTTGAAGACAAGCGTAAAACCCAGGCAGAAATCTGCAAGGTGACCGGTCTTACTGAAGTCACTCTTCGTAAAGTGTACAAGGAACTTCTAGAGAATTGGGATGATTTGCTTCCCTCTAATTATACACCAGCTGTTCCTCCCGAGAGGGCATTTCCTACTACTGTAATTGCTTCAGGTCGTTCATCAGCAACTAAGGTTGATGCAATAGATGTTAATTCTGCTTTGGACAGAGACAAGCTAATAGAAATCAAACCTAGCAAATCGAATGACGTTCCAGTCATGGTACATCAGCTCAGGGGGAAAGATGATGTTGAAAGTAAGAGCAATGCTTGCGTGACCCACTCGACACTGAATCAGCAGTCAGCTTCGTGGCAATCCCAGCTTCCTATTGGGGCGTGTAATCATAAAATTACAGGAGAAAAAGGTCGAAATGTTTTGCAAGGAATGGACATTGAGGGACAGCAGCATAACCACCTACAGCCTGAACAGAAGTCTGAAGACACAAATGGTATTAATATTAATCCTTTTCAAAATCCCAACCATCTTAGCAGTCCTTCTGCGTCGTCTGCTGGCCCTGTTATGAAGCCCTATTCGGCTTTGCCTTCATCTGCGCCTCCAAATGTTTGA 1566 0.4783 MRNPLAAQIEHRPQRIHLEKEERKKMKCPYCAAAQGRSATTSSARFISECTSCGRVVEERQSHPHHLFHLRAQDNPLCLVTPDLPSIQSFHQSQDDDDPFEPTGFITAFSTWSLEPSPLYLQSCLSFSGHLAELERVLESSSSSSSSSTPSSSTSSTVVVDNLRAYMQIIDVASILGLDYDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSATKVDAIDVNSALDRDKLIEIKPSKSNDVPVMVHQLRGKDDVESKSNACVTHSTLNQQSASWQSQLPIGACNHKITGEKGRNVLQGMDIEGQQHNHLQPEQKSEDTNGININPFQNPNHLSSPSASSAGPVMKPYSALPSSAPPNV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0312 521 FunFam Transcription initiation factor IIB 263 360 - -
Prci10g0312 521 Gene3D - 263 359 - -
Prci10g0312 521 Gene3D - 163 254 - -
Prci10g0312 521 FunFam Transcription initiation factor TFIIB 163 254 - -
Prci10g0312 521 MobiDBLite consensus disorder prediction 477 504 - -
Prci10g0312 521 SUPERFAMILY Cyclin-like 261 359 IPR036915 -
Prci10g0312 521 SUPERFAMILY Cyclin-like 164 254 IPR036915 -
Prci10g0312 521 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 26 375 IPR000812 GO:0006352|GO:0070897
Prci10g0312 521 SMART cyclin_7 263 344 IPR013763 -
Prci10g0312 521 SMART cyclin_7 167 248 IPR013763 -
Prci10g0312 521 Pfam Transcription factor TFIIB repeat 263 344 IPR013150 GO:0017025
Prci10g0312 521 Pfam Transcription factor TFIIB repeat 165 246 IPR013150 GO:0017025
Prci10g0312 521 CDD CYCLIN_TFIIB_archaea_like_rpt2 260 346 - -
Prci10g0312 521 PRINTS Transcription initiation factor IIB signature 264 282 IPR000812 GO:0006352|GO:0070897
Prci10g0312 521 PRINTS Transcription initiation factor IIB signature 209 228 IPR000812 GO:0006352|GO:0070897
Prci10g0312 521 PRINTS Transcription initiation factor IIB signature 235 250 IPR000812 GO:0006352|GO:0070897
Prci10g0312 521 PRINTS Transcription initiation factor IIB signature 298 314 IPR000812 GO:0006352|GO:0070897
Prci10g0312 521 PRINTS Transcription initiation factor IIB signature 43 63 IPR000812 GO:0006352|GO:0070897
Prci10g0312 521 PRINTS Transcription initiation factor IIB signature 330 344 IPR000812 GO:0006352|GO:0070897
Prci10g0312 521 MobiDBLite consensus disorder prediction 470 521 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0312 K03124 - gmx:102662353 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0312 10 2052992 2058103 Prci10g0312 10 2052992 2058103 ECH