Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0296 ATGGTGCACAATGCCTACGATTCTTTCCAACTCCTCGATAATTGTCCTTCGAAGATCGAAGCTGTCGAATCTTACGGCTCTAAGCTCCTTCTGGGCTGCTCTGATGGCTCCCTCCGAATATACGCGCCAGAATCGTCCGATTCCGATCGGTCTCCGTCGGCCGATCAACACGCTCAGGAGCTGCGGAAGGAAGCCTACGTGCTCGAAAGAAACTTGACTGGCTTTGCGAAGAAGCCTATCTTATCAATGGAGGTCTTGGAATCCAGGGAACTGCTTCTTTCACTTTCCGAATCTATTGCTTTTCACCGTCTTCCTAATTTTGAAACCATAGCAGTCATCACCAAGGCTAAGGGCGCCAATGTGTTCTCCTGGGATGACCGAAGAGGTTTCTTATGCTTCGCGAGGCAAAAGAGGGTCTGTATTTTCAGACACGATGGTGGTAGAGGTTTTGTGGATGTGAAAGAATTTGGTGTTCCAGATGTGGTGAAGTCGATGTCTTGGTGTGGTGAAAATATATGTCTGGGAATTAGAAGAGAATATGTCATACTGAATGCTACAAATGGTGCGTTGTCTGAGGTATTTACTTCTGGTAGACTAGCGCCGCCTTTAGTGGTCTCTCTATCTTCGGGGGAACTTCTTCTTGGAAAGGAGAACATTGGAGTCTTTGTGGACCAAAATGGGAAACTTCTTCCAGAAGGCAGGATTTGTTGGTCAGAGGCTCCCGCAGAAGTTGTAATCTGGAAACCATATGGAATAGCTCTGCTGCCAAGATTTGTAGAGGTTCGATCCCTTCGAGATCCATATCCACTGATCCAGACTGTTGTTATTCGAAATGTTCGTCATATTCGCCAAAGCAATAATTCAGTGATGCTTGCATTAGATAATTCTGTTCACGGACTCTTCCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCATCTGGCGACTTTGAAGAAGCTCTGTCATTGTGCAAACTCCTTGCACCTGAAGATTCAAATCTCCGTGCTGCAAAGGAGGGTTCAATCCATATAAGATATGCTCACTATCTTTTTGAAAATGGGAGCTATGAGGAGGCAATGGAACATTTTCTTGCATCTCAAGTGGATATAACTTATGTTCTTTCTCTGTATCCATCCATTATCCTTCCCAAGACAACCATTGTTACTGAGCCTGACAAGTTGGCAGGCATTTGCTTGGATGCTTCATATCTCTCTAGGGGTTCTTCAGGCCTTTCAGATGATATGGAAACCCCACCACCACCACCTTTATCAGAATCCGATGCAGCGCTTGAAACCAAAAAGATGAATCATAATATGCTTATGGCTCTCATAAAGTTTTTGCAGAAGAAGAGATATAGTGTTATTGAGAAGGCCACTTCTGAGGGGACGGAGGAGGTTGTTTTAGATGCAGTTGGGGACAACCTAGTATCCTATAACAGTCGTAGGTTTAAGAAAACAAACAAGGGGCGTGGTAGTGTTCCTGTTAGTTCAGGGGCTCGGGAAATGGCTTCATTGTTGGATACTGCACTACTCCAAGCATTACTTCTTACCGGACAATCTTCCTCTGCTTTAGAACTACTGAGAGTTCCAAACTATTGTGATTTGAAGATATGTGAAGAGGTACTTCAAAAAGGAAACAGTAATGTTGCTTTATTAGAACTTTACAAGTGCAATTCAATGCATCGAGAAGCTCTTGAACTTCTTCATCAGTTGATAGAAGAGTCAAAGTCAAACCCATCTGAAGTTACGCACAAGTTAAAGCCTGAGGCAATTATTGAATATCTCAAGCCTCTGTGTAGTTCAGACCCCATGCTTGTCCTGGAGTACTCAATGCTTGTTCTTGAAAGCTGTCCGACACAGACTATAGAGCTCTTTCTCTCTGGAAATATACCTGCAGATATGGTGAACTCCTATTTGAAGCAACATTCTCCAAATATGCAGACTACCTACTTGGAACTCATGCTTGCAATGAATGAGAGTGCTGTCTCTGGAAATTTGCAAAATGAAATGGTGCAAATCTATCTTTCTGAAGTACTTGAGTGGCATGATGATTTAAGTGCTCAACAGAAATGGGATGAGAAAGCTTTCTCCCCAACAAGGAAGAAATTATTGTCTGCTTTAGAGAGTATATCAGGATACAATCCAGAAGCTCTATTGAAACGTCTTCCACCAGATGCTCTGTATGAGGAGCGTGCTATATTGTTGGGAAAAATGAACCAACATGAATTGGCACTGTCTTTATATGTACATAAGCTTCATGTTCCAGAATCAGCATTATCTTATTGTGATCGAGTATATGATTCAACAAATCACCCTTCAGGAAAATCTCCCAGCAACATATACCTATCTCTTCTGAAAATCTATTTAAATCCACAAAGGACAACCAACAGTTTTGAAAAGAGAATCATGAATCTATTATCTCTCCAGAATACAAGCATTCCAAAGGTTGGCCCTATGACATCAGTAAAATCTAAAGCAGGCCGAGGAAATAAAAAGATTGCGGCAATAGAAGGTGCTGAGGACACAAAAGTTAGTTTGAGCAGCACTGATAGTAGCCGGAGCGATGGTGATCCGGATGAAATTAGTGAGGAAGGTGGCAGTGCCATCATGCTTGATGAAGTCCTTGATTTGTTGAGCCGCAGATGGGATAGAATAAATGGAGCTCAGGCCCTCAAACTTCTACCAAGAGAAACTAAACTACAGAACTTGCGTCCATTTCTGGGACCTCTTATGCGAAAATCTAGTGAAATGTACCGTAATTACTCGGTGATCAAGAGCTTGAGACAAAGCGAGAACCTTCAGGTGAAAGATGAACTCTATAATCAGAGGAAAGCAACTGTGAAGATAACCGGTGACAGCATGTGTTCACTTTGCCATAAGAAGATAGGGACTAGTGTATTTGCAGTTTACCCCAATGGAAAAACTCTAGTGCACTTTGTCTGTTTCAGAGATTCTCAGAGCATGAGAGCTGTGGCCAAAGGATCATCACTGAGGAAGCGGATATAG 3009 0.4274 MVHNAYDSFQLLDNCPSKIEAVESYGSKLLLGCSDGSLRIYAPESSDSDRSPSADQHAQELRKEAYVLERNLTGFAKKPILSMEVLESRELLLSLSESIAFHRLPNFETIAVITKAKGANVFSWDDRRGFLCFARQKRVCIFRHDGGRGFVDVKEFGVPDVVKSMSWCGENICLGIRREYVILNATNGALSEVFTSGRLAPPLVVSLSSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPAEVVIWKPYGIALLPRFVEVRSLRDPYPLIQTVVIRNVRHIRQSNNSVMLALDNSVHGLFPVPLGAQIVQLTASGDFEEALSLCKLLAPEDSNLRAAKEGSIHIRYAHYLFENGSYEEAMEHFLASQVDITYVLSLYPSIILPKTTIVTEPDKLAGICLDASYLSRGSSGLSDDMETPPPPPLSESDAALETKKMNHNMLMALIKFLQKKRYSVIEKATSEGTEEVVLDAVGDNLVSYNSRRFKKTNKGRGSVPVSSGAREMASLLDTALLQALLLTGQSSSALELLRVPNYCDLKICEEVLQKGNSNVALLELYKCNSMHREALELLHQLIEESKSNPSEVTHKLKPEAIIEYLKPLCSSDPMLVLEYSMLVLESCPTQTIELFLSGNIPADMVNSYLKQHSPNMQTTYLELMLAMNESAVSGNLQNEMVQIYLSEVLEWHDDLSAQQKWDEKAFSPTRKKLLSALESISGYNPEALLKRLPPDALYEERAILLGKMNQHELALSLYVHKLHVPESALSYCDRVYDSTNHPSGKSPSNIYLSLLKIYLNPQRTTNSFEKRIMNLLSLQNTSIPKVGPMTSVKSKAGRGNKKIAAIEGAEDTKVSLSSTDSSRSDGDPDEISEEGGSAIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQNLRPFLGPLMRKSSEMYRNYSVIKSLRQSENLQVKDELYNQRKATVKITGDSMCSLCHKKIGTSVFAVYPNGKTLVHFVCFRDSQSMRAVAKGSSLRKRI 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0296 1002 ProSiteProfiles Citron homology (CNH) domain profile. 16 289 IPR001180 -
Prci10g0296 1002 PANTHER CNH DOMAIN CONTAINING 1 989 IPR032914 GO:0016192
Prci10g0296 1002 Pfam CNH domain 26 280 IPR001180 -
Prci10g0296 1002 Pfam Vacuolar sorting protein 39 domain 1 507 615 IPR019452 -
Prci10g0296 1002 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 610 797 IPR000547 GO:0006886|GO:0016192
Prci10g0296 1002 SUPERFAMILY WD40 repeat-like 25 179 IPR036322 GO:0005515
Prci10g0296 1002 Pfam Region in Clathrin and VPS 635 768 IPR000547 GO:0006886|GO:0016192
Prci10g0296 1002 MobiDBLite consensus disorder prediction 843 866 - -
Prci10g0296 1002 MobiDBLite consensus disorder prediction 408 427 - -
Prci10g0296 1002 Pfam Vacuolar sorting protein 39 domain 2 876 984 IPR019453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0296 Prci-Chr10 1905469 1913913 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0296 K20183 - qsu:111998801 1590.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0296 10 1905469 1913913 Prci10g0296 10 1905469 1913913 ECH