Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0152 ATGGTGCTCGAGGCAACAATGATCTGTATTGATAATTCCGAATGGATGCGTAACGGGGATTACGCACCTTCTCGATTTCAAGCCCAAGCAGATGCTGTCAATCTTATATGCGGTGCCAAAACACAGTCTAATCCAGAAAATACAGTCGGAGTTCTCACAATGGCAGGGAAGGGAGTTCGGGTTTTGGTGACTCCCACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCACGGACTAGAAATAGGTGGGGAAATGAACCTAGCTGCTGGTATTCAAGTGGCACAATTGGCTCTCAAGCATCGGCAAAATAAGAAACAGCAGCAAAGAATTATCATTTTTGCTGGAAGTCCTGTCAAACATGAGAAGAAGCTGCTGGAGATGATTGGGAGAAAACTAAAAAAGAACAGCGTAGCCCTTGACATTATCAATTTCGGTGAAGAAGATGAGGGCAAGACAGAGAAGCTGGAAGCACTTCTTGCGGCTGTTAATAATAATGATACAAGCCATATTGTCCATGTTCCAGCTGGTCCCAATGCTCTTTCTGATGTACTTATAAGTACACCTGTGTTTACTGGGGATGGGGAAGGTGGAAGTGGTTTCGCTGCTGCAGCAGCTGCAGCTGCAGCTGGTGGTGTATCTGGTTTTGAGTTTGGTGTGGATCCAAACTTGGATCCTGAGTTGGCTCTTGCTTTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAGGAGGCAGCTGCAAAAAAGGCTGCTGAGGATGCTGCCAAACAGGAGAAAGGAGATGAGCAGCAAGCTAGTGCACAAGATGCAACAATGACAGAGCGAACAGGTGCTGCAACATCTGAAGCTGATAACAAGACAAATGATTTGATGGATGATGAGAATGCTCTCCTGCAGCAGGCGCTTGCAATGTCAATGGATGATCCTGCCATTAACCATGACTTAAGAGATACAGATATGTCTGAAACAACTGCAGAAGATCCTGATTTGGCGCTTGCCCTGAAACTGTCAGTAACAGACAATACAAAGGATTCAGCAAGCCAGTCAGACATGAGTAAATTGTTGGCTGATCAGTCCTTCGTATCTTCTATCCTTGCTTCACTTCCCGGGGTTGACCCTAACGACCCATCTGTCAAAGATCTTCTGGCCTCCATGCAAAGTCAGTCTGAGCCCCAGCAGAAGAATGAAGATAAGCCGCCAAATGAGGAGGAAAAGAAATAA 1218 0.4606 MVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIIFAGSPVKHEKKLLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLAAVNNNDTSHIVHVPAGPNALSDVLISTPVFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGDEQQASAQDATMTERTGAATSEADNKTNDLMDDENALLQQALAMSMDDPAINHDLRDTDMSETTAEDPDLALALKLSVTDNTKDSASQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSEPQQKNEDKPPNEEEKK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0152 405 MobiDBLite consensus disorder prediction 379 393 - -
Prci10g0152 405 MobiDBLite consensus disorder prediction 242 288 - -
Prci10g0152 405 SMART uim 292 311 IPR003903 -
Prci10g0152 405 SMART uim 222 241 IPR003903 -
Prci10g0152 405 SMART uim 324 343 IPR003903 -
Prci10g0152 405 SUPERFAMILY vWA-like 4 175 IPR036465 -
Prci10g0152 405 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Prci10g0152 405 Pfam Ubiquitin interaction motif 325 336 IPR003903 -
Prci10g0152 405 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Prci10g0152 405 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Prci10g0152 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 397 IPR027040 GO:0006511|GO:0008540
Prci10g0152 405 FunFam 26S proteasome regulatory subunit N10 220 306 - -
Prci10g0152 405 Coils Coil 232 257 - -
Prci10g0152 405 Gene3D - 220 306 - -
Prci10g0152 405 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Prci10g0152 405 SMART VWA_4 2 175 IPR002035 -
Prci10g0152 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Prci10g0152 405 MobiDBLite consensus disorder prediction 242 262 - -
Prci10g0152 405 MobiDBLite consensus disorder prediction 263 284 - -
Prci10g0152 405 CDD VWA_26S_proteasome_subunit 1 188 - -
Prci10g0152 405 CDD PSMD4_RAZUL 345 389 - -
Prci10g0152 405 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Prci10g0152 405 MobiDBLite consensus disorder prediction 365 405 - -
Prci10g0152 405 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0152 K03029 - gmx:100814594 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0152 10 948573 953340 Prci10g0152 10 948573 953340 ECH