Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01792 ATGGCATCCATTGATGCTCACCTTCGGCTTTTGGTTCCAGCCAAAGTGAGTGAGGATGACAAACTGGTTGAGTATGATGCTTTGCTCTTAGATCGGTTCCTTGATATTCTTCAGGATTTACACGGGGAGGATCTGAAGGAAACGGTTCAAGAGGTGTATGAGCTTTCTGCTGAGTATGAAGGAAAGCATAACTCAAAGAAACTGGAAGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCCATTGTTGTTGCCAAGTCGTTTTCCCACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTCCAAATTGCTCACCGCCGAAGGAACAAGTTGAAGAAAGGTGATTTTGCTGATGAGAACAGTGCCACAACTGAATCAGACATCGAAGAAACACTTAAGAAACTTGTGGTGGATTTGAAGAAGTCTCCTCAGGAAGTTTTTGATGAACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCAGTCCGTAGATCTTTGCTTCAGAAGCACGGAAGGATAAGAAATTGTTTAACACAATTGTATGCCAAAGACATCACTCCAGATGACAAACAGGAACTTGATGAGGCTCTACAGAGGGAGATCCAAGCTGCATTCCGCACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGGGCAGGGATGAGTTACTTCCATGAAACAATTTGGAAGGGTGTACCTGAGTTTCTTCGTCGTGTTGATACAGCTTTGAAGAACATAGGGATTAATGAACGTGTCCCTTATAATGCTCCACTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACCAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTACCTTGTACTATTCCCAGATAGAGGATCTTATGTTTGAACTGTCAATGTGGCGCTGCAACGATGAGCTACAGGTCCGTGCAGATGAGATTAACAGGTCTTCCAAGAAAAATGCAGTTGCAAAACACTACATAGAATTTTGGAAAGTCATTCCTCCAAATGAACCATATCGTGTGTTACTGGGTGAAGTAAGGAATAGGCTTTACCAGACTCGTGAACGCTCTCGCCATTTGCTAGCTCATGGCTACTCTGACATTCCAGAAGAAGAAACTTTCACCAATGTTGAGGAGTTCTTGGAACCCCTTGAACTCTGTTACAGGTCACTCTGTGCTTGTGGTGATCGTGCAATTGCTGATGGAAGCCTGCTAGATTTCTTGAGGCAAGTCTCTACTTTCGGCCTATCCCTTGTGAGGCTTGACATAAGGCAAGAATCTGACCGTCACACTGATGTCTTAGATGCCATCACCAAGCACTTGGAAATAGGTTCATACCAGGAATGGTCAGAGGAAAAACGGCAGCAATGGCTTTTATCCGAATTGAGTGGCAAACGGCCCCTATTTGGCCCTGACCTTCCCCAAACCGAAGAAATCAGAGATGTTTTGGACACTTTCCATGTGATATCAGAGCTTCCTCCAGACAATTTTGGGGCATACATCATCTCAATGGCAACAGCACCATCTGATGTGCTTGCAGTTGAGCTTCTGCAGCGAGAGTGCCATGTCAAACACCCATTGAGAGTTGTGCCATTGTTTGAGAAGCTGGATGATCTAGAAGCAGCACCAGCTGCACTGGCACGGTTGTTCTCCATAGACTGGTACATAAACAGGATCAATGGGAAGCAAGAAGTGATGATAGGGTATTCTGATTCAGGCAAGGATGCTGGAAGGTTTTCTGCTGCATGGCAACTGTATAAGGCTCAGGAGGATCTTATAAAGGTGGCTAAGAAGTATGGTGTGAAGCTAACTATGTTCCATGGTCGAGGAGGGACTGTTGGAAGAGGAGGTGGTCCAACTCATCTTGCTATTTTGTCTCAGCCTCCAGATACAATTCATGGATCACTGCGTGTTACTGTGCAAGGTGAAGTTATTGAGCAATCGTTTGGGGAGCATCATTTGTGCTTCAGAACACTTCAGAGGTTCACTGCTGCTACTCTAGAACATGGAATGCGCCCTCCAATTTCGCCTAAACCAGAATGGAGGGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGGTCCATTGTGTTCAAAGAACCTCGGTTTGTTGAGTATTTCCGCCTGGCTACACCTGAGTTGGAGTATGGAAGGATGAACATAGGAAGTCGACCAGCAAAGAGGAGGCCAAGTGGAGGCATTGAGACACTGCGTGCTATACCTTGGATCTTTGCCTGGACCCAGACAAGGTTCCATCTTCCAGTGTGGCTAGGTTTTGGGGCAGCATTCAAACATGTTATTGAGAAGGATGTCAGGAATATTCATGTGCTGCAGGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCAGGGATTGCTGCTCTGTATGACAGGCTCCTTGTTTCAGAGGATCTGTGGCCATTTGGGGAGCAGTTAAGGACCAAGTATGAAGAAACCAAGGCACTCCTCCTTCAGGTGGCTGGCCATAAGGATCTTCTTGAAGGAGATCCACACTTGAAGCAAAGACTTAGGTTGCGTGATTCTTATATCACCACCCTAAATGTGTGCCAAGCATACACGTTGAAACGCATCCGTGATCCAAACTATAACGTGAAGCTGCGTCCTCACATCTCCAAAGAGTCTATAGAGATAAGCAAACCTGCTGATGAACTCATAACACTTAACCCAACAAGTGAGTATGCCCCTGGTTTGGAAGACACTCTCATTCTCACCATGAAGGGTATTGCTGCTGGTCTGCAAAACACTGGTTAA 2880 0.4535 MASIDAHLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHNSKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFADENSATTESDIEETLKKLVVDLKKSPQEVFDELKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPEFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAATLYYSQIEDLMFELSMWRCNDELQVRADEINRSSKKNAVAKHYIEFWKVIPPNEPYRVLLGEVRNRLYQTRERSRHLLAHGYSDIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVISELPPDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLDDLEAAPAALARLFSIDWYINRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLIKVAKKYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEHHLCFRTLQRFTAATLEHGMRPPISPKPEWRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDVRNIHVLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWPFGEQLRTKYEETKALLLQVAGHKDLLEGDPHLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01792 959 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 160 171 IPR018129 -
Phco9g01792 959 PRINTS Phosphoenolpyruvate carboxylase signature 272 287 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 PRINTS Phosphoenolpyruvate carboxylase signature 159 172 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 PRINTS Phosphoenolpyruvate carboxylase signature 434 454 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 PRINTS Phosphoenolpyruvate carboxylase signature 757 783 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 PRINTS Phosphoenolpyruvate carboxylase signature 625 654 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 PRINTS Phosphoenolpyruvate carboxylase signature 583 603 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 PRINTS Phosphoenolpyruvate carboxylase signature 212 228 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 585 597 IPR033129 -
Phco9g01792 959 Hamap Phosphoenolpyruvate carboxylase [ppc]. 15 959 IPR022805 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 Pfam Phosphoenolpyruvate carboxylase 28 959 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 Coils Coil 96 116 - -
Phco9g01792 959 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 25 959 IPR015813 GO:0003824
Phco9g01792 959 Gene3D Phosphoenolpyruvate/pyruvate domain 300 437 - -
Phco9g01792 959 Coils Coil 955 959 - -
Phco9g01792 959 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 17 959 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco9g01792 959 FunFam Phosphoenolpyruvate carboxylase 1 300 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01792 Phco-Chr9 41956694 41963685 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00675 10 8006803 8011894 Phco9g01792 9 41956694 41963685 PCT
Phco9g01792 9 41956694 41963685 Phco10g01113 10 32893720 32899003 PCT