Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01790 ATGTCACATTCTGGGAAACCCGTATCCGAGTTAGGGCTCAGCGAGCGCTTGCGCGACTCACTGAGTTGCTCTGACGATTCCAACAAGCCCGATTTCCGAGAACTGGATTTGGGTTCGCCGGTTTCCACATTGCGGCCACGCCAGCACTTCCAAAACCACAGTGCGCCCACCACGAGTAGTAACAGTAGCAGTAGCAGCGGCGGCTCTACAGGGTCGGTTCCGGGTCGGAGCAACCCGGTTTCGGGAAGATCCCATTCTGGCGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACCCGGGTATCCAAACCGGGTCACCGGAGATCTAGTTCTGGTCAGAGTTTGAGTCAGAGCCAGAGATCCCCGTCGTCGTCATCTGCTGCCGTGAATTCGCCGCCGCTGAATGTTCTCCCGGCCGGGAACATTTGTCCGTCCGGGAGGGTTCTCAAGGCAGCGACTGTGGCGGCAGTAGCGAGCCGGAGCTCCAGGAGTGATGTATTGGGGTCCGGCACGGGGAATTATGGCCACGGGAGCATAATGCGTGGCGGAAAGGGTGGCGGGGATGCGGCTAGTGTTAAGATCGGCGGCGGTGATTCGGGGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTACAAGAGAGGGCACTTTGGTGAGGCCTTGTGTTTGTATGATCGGGCAATTGCGATGTCTCCGGGCAATGCCGCTTATCGGAGCAACCGGGCGGCAGCATTGACCGGATTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTACGGGAGGGCGCATCAGCGCTTGGCAACGTTGTTATTAAGGTTAGGACAGGTTGAGGATGCTAGGAAGCACCTTTGTTATCCTGGGCTGCACCCGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTCGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTAGCTGCTGGAGCTGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAGCTACACCAGATGGATGATGCTGAATTGTGTTTATCATGGATTCCCAAAAGTGAGCCGCATCCGAGTTCCTTAGCACAGGCAAGATTTTTTGGGATGTTTTCTGAAGCTTACTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATCGACCCCCGAAATGTTGAAGTTGCTGTTCTGCTCAAGAATGTGAGGATGGTGGCTAGAGCTAGACTGCGTGGCAATGATCTTTTTAAGTCAGAAAGGTTCACCGAGGCGTGCTCGGCATATGGAGAAGGTTTGAGGCTTGATCCTTCAAACTCTGTTCTCTACTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGATTGCAATCAAGCTTTACGCATCCAACCAAATTACACAAAAGCAATTCTTCGGAGGGCTGCCTCAAACAGCAAGTTAGAAAGATGGGAAGAAGCAGTAAAGGATTATGAACTTTTGCGGAGAGAATTACCAGATGACAATGGTGTTGCCGAAAATCTGTTTCATGCACAAGTAGCATTAAAGAAATCTCGTGGGGAAGAAGTAAATAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGCTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTCGCAATGTAAGCAGATATCTCCTTTCGTGGTTACACTGTGCAGTCGCTATCCATCTATCAACTTTCTTAAGGTGGATATTCAAGCAAGCCCTGCAGTTGCCACTGCGGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACATTCCATTAGGCATTACAGCTTGTAG 2034 0.5025 MSHSGKPVSELGLSERLRDSLSCSDDSNKPDFRELDLGSPVSTLRPRQHFQNHSAPTTSSNSSSSSGGSTGSVPGRSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSSSGQSLSQSQRSPSSSSAAVNSPPLNVLPAGNICPSGRVLKAATVAAVASRSSRSDVLGSGTGNYGHGSIMRGGKGGGDAASVKIGGGDSGKRVDPEEVKRMGNEEYKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLLLRLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQMDDAELCLSWIPKSEPHPSSLAQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNGVAENLFHAQVALKKSRGEEVNNLKFGGEVEDISGLEQLRAAISLPGVSVVHFETASNSQCKQISPFVVTLCSRYPSINFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01790 677 Pfam Thioredoxin 595 669 IPR013766 -
Phco9g01790 677 ProSiteProfiles TPR repeat profile. 397 430 IPR019734 GO:0005515
Phco9g01790 677 MobiDBLite consensus disorder prediction 157 171 - -
Phco9g01790 677 MobiDBLite consensus disorder prediction 157 208 - -
Phco9g01790 677 ProSiteProfiles TPR repeat profile. 205 238 IPR019734 GO:0005515
Phco9g01790 677 SMART tpr_5 511 544 IPR019734 GO:0005515
Phco9g01790 677 SMART tpr_5 443 476 IPR019734 GO:0005515
Phco9g01790 677 SMART tpr_5 477 510 IPR019734 GO:0005515
Phco9g01790 677 SMART tpr_5 205 238 IPR019734 GO:0005515
Phco9g01790 677 SMART tpr_5 349 382 IPR019734 GO:0005515
Phco9g01790 677 SMART tpr_5 239 272 IPR019734 GO:0005515
Phco9g01790 677 SMART tpr_5 397 430 IPR019734 GO:0005515
Phco9g01790 677 Gene3D Tetratricopeptide repeat domain 203 563 IPR011990 GO:0005515
Phco9g01790 677 MobiDBLite consensus disorder prediction 19 33 - -
Phco9g01790 677 MobiDBLite consensus disorder prediction 44 132 - -
Phco9g01790 677 Coils Coil 517 537 - -
Phco9g01790 677 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 674 IPR044534 -
Phco9g01790 677 SUPERFAMILY TPR-like 205 433 IPR011990 GO:0005515
Phco9g01790 677 MobiDBLite consensus disorder prediction 1 134 - -
Phco9g01790 677 ProSiteProfiles TPR repeat profile. 477 510 IPR019734 GO:0005515
Phco9g01790 677 FunFam TPR repeat-containing thioredoxin TTL4 569 676 - -
Phco9g01790 677 SUPERFAMILY Thioredoxin-like 480 675 IPR036249 -
Phco9g01790 677 Gene3D Glutaredoxin 569 676 - -
Phco9g01790 677 Pfam Tetratricopeptide repeat 399 430 IPR019734 GO:0005515
Phco9g01790 677 CDD TRX_family 582 663 - -
Phco9g01790 677 Pfam Tetratricopeptide repeat 211 271 - -
Phco9g01790 677 Pfam Tetratricopeptide repeat 479 510 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01790 Phco-Chr9 41935162 41938322 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01790 9 41935162 41938322 Phco9g01790 9 41935162 41938322 ECH
Phco10g00682 10 8090409 8093385 Phco9g01790 9 41935162 41938322 PCT