Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01607 ATGATTGAATTTAAGGGTGGATTTGAAGAATCAGTGGTGACCCTTTTGTTGTTGTGTTTGTGGATAGCTGTTATTTTCATCTCTTTGGTTTTGGGGATGAGTAGAAATGATGGCCAGAAACAACGGCACCTTCTTCATGGAGGTGTTGCTGCTGGTACTGGTGGCAAAACCAACAGCAATGGCTTTATTCCCAGCTCCTTTCGTACTTTCTCTGGTTACCTGAAGATTGTTTCATCAGGTGCTTCTACCGTTGCTCGGTCAGCTGCTGCCTCTTTTGCATCATCGATTTTGGATAAGCATGATGTTGCTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACATTAGAGGGCCAGGGAGAAGTTATTCGACAAGTACTTCTTCTAGGCTATTGGTCTGGCTTCCAGGTTTTGGATGTTGATGATTCAAATAATGTCTGTGACCTAGTTTCCAGAAACGATGGCCCTGTTTCTTTTATGCAAATGGTACCAAGTCCAACTGTATTGAAGAGACTGGAGGACAAGTTTGTAGACAAGCGTCCATTGTTGGCATTATGTGTGAATGATTTCTTGGCAGGAGGAGGCAATATACGAGAGGGTTTGGTTGCCACTAGCAATGGGGGCACTTTAAACCACCATGACCAAGTGAATGGAAACTATATGCCAACTACTGTTCAATTTTATTCTATGAGGTCTCAATCATATATTCATACACTAAACTTTAGATCAGTTGTTTATTCTGTAAGATGTAGTTCTCGAGTAGTTGCTGTTTCTCTTGCCACCCAGATACACTGTTTTTCTCCCACAACTTTAGTAAGGGAGTATATTTTACATACCAATCCTATAGTAATGAGTTGTCCTGGTTCTGGAGGCATTGGATTTGGACCACTGGCAGTGGGTCCTAGATGGCTGGCCTATAGTGGAAGTCCTGCTGTAATAGCCTCTTCTGGGCGTGTCAGTCCACACCATTTGACACCTTCTGCAAGCTTTCCAGGTTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGACCCTTGGAGATATGGGGTACAAGAAACTTTCCGGTTACTGCTCAGAACTGCTCCCAGATAACAGTGGTTCTATACGATCTGTAAATTCTAGCACAAACGGAAATAGAATCATTCATGGCCATTCAACAGATGTGGAAAGTGTTGGGATGGTCATTGTAAGAGATATAGTCAGTAAAAATGTCATTGCCCAATTTCAAGCCCACAGGAGTTCCATTTCAGCTTTATGCTTTGATCCTAGTGGGACCATCTTAGTAACTGCTTCTGTTCAGGGGCATAACATTAATGTTTTTAAGATAATGCCTGGATATGAGAGAGTGTCTGCATCTGATGCTGTCCCTTATGTTCATCTCTACAGGCTGCAACGAGGCTTGACAAATGCAGTTATTCAAGATATTAGTTTTAGCATTGATACCAGGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTGTTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTGTCATGTGACAATAGTTTAACCGAAAAAGATGGTTTGAATGTTATGCCTAATCAAGCAGTTCATTGGCCTCGTAATTCAGCTGTAGAAATTTGTAAACGGCAGAGCCTCTGTGCTGCCGGTCCTCCGATCACACTCTCTGCTGTAAGCAGAATTAGGAATGGATCTAATGGATGGAGAAGCACGGTAACTGGTACTGCTTCTGGGGCTATTGCTTCTTCTTTCCATAACTTTGAAGGCAGAAGTACCTTGGACGGTAATGGGAACTATTCCAAGGAAAAGTATCATCTATTTGTCTTTACATCAACAGGTTCAATGATGCAATATGCTCTGCAGACAATTAACTGTCAAGATTCAGGTGTTGTTTCTGGAGTAATGCCTGCACATGAGTCTTCCCCTCTGACTGATGCAAGAGTAGTTGTTGAGCCTATCAAGAAGTGGAATATAAATCGAAGATATAGTTGGAGAGAGGGAGAAGAAAATATTGACATTTATGGAGAGAATGGAGTTTCAGATATCGATAAAGTATACTCGGAGGAAGTAAAAGATAATATCATCAGCCCTAAAATGAAGAATGTATCTGTGAAATTAAATTCCTGTTCTGAGAAAGAACATCATTTGTATATTTCAGAAGCTGAACTGCAAATGCATGAAGCTAAGACACCATTGTGGGCAAAGACTGAGATATATTTTCATTCAGTGGCTAAAGAGGATACTTCGATGATGGATGAAAAGGCCGCTTCTGGAGGGGAATTTGAGATTGAAAAGATTCTGACTCGTGTGATAGAAGCTAGGTTGAAAGACTTGGTTCCAATTTTTGACTATATTCAGACTTCAAAATTTCAACATACAAGGACTCCTGCTGTGGAAAACAAGTTAAATGCCCAATTTTTGCATCAAAATTCTAAGTTGTTTGAAAAGGGAAGGATTTCACCAGGGAGTAGATCTCCTGGTTGTATGACTAATTCTGGTGGAAATATTGCTGAATTTAATAGTGGCATTGAAGGAAATGAGTGGGATGAGGGTTTGATTCCAGCAGAAGCAGAGGGTCTTGTAAATAACAATAACACCCTTAAACCAGATACTAGGCCAGAGACTGTAAATAATAGAAGAGGGCACATAGAGATGGATGTTCATCACATGTTTGTAAATAGTGACAGAAAAGGCCTGAAACTGGAGAATCACCATGAAGAAAAAGAAGGGGAATTTGATTGA 2775 0.4105 MIEFKGGFEESVVTLLLLCLWIAVIFISLVLGMSRNDGQKQRHLLHGGVAAGTGGKTNSNGFIPSSFRTFSGYLKIVSSGASTVARSAAASFASSILDKHDVADRDRVIWAGFDTLEGQGEVIRQVLLLGYWSGFQVLDVDDSNNVCDLVSRNDGPVSFMQMVPSPTVLKRLEDKFVDKRPLLALCVNDFLAGGGNIREGLVATSNGGTLNHHDQVNGNYMPTTVQFYSMRSQSYIHTLNFRSVVYSVRCSSRVVAVSLATQIHCFSPTTLVREYILHTNPIVMSCPGSGGIGFGPLAVGPRWLAYSGSPAVIASSGRVSPHHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVTLGDMGYKKLSGYCSELLPDNSGSIRSVNSSTNGNRIIHGHSTDVESVGMVIVRDIVSKNVIAQFQAHRSSISALCFDPSGTILVTASVQGHNINVFKIMPGYERVSASDAVPYVHLYRLQRGLTNAVIQDISFSIDTRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKDGLNVMPNQAVHWPRNSAVEICKRQSLCAAGPPITLSAVSRIRNGSNGWRSTVTGTASGAIASSFHNFEGRSTLDGNGNYSKEKYHLFVFTSTGSMMQYALQTINCQDSGVVSGVMPAHESSPLTDARVVVEPIKKWNINRRYSWREGEENIDIYGENGVSDIDKVYSEEVKDNIISPKMKNVSVKLNSCSEKEHHLYISEAELQMHEAKTPLWAKTEIYFHSVAKEDTSMMDEKAASGGEFEIEKILTRVIEARLKDLVPIFDYIQTSKFQHTRTPAVENKLNAQFLHQNSKLFEKGRISPGSRSPGCMTNSGGNIAEFNSGIEGNEWDEGLIPAEAEGLVNNNNTLKPDTRPETVNNRRGHIEMDVHHMFVNSDRKGLKLENHHEEKEGEFD 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01607 924 Pfam Breast carcinoma amplified sequence 3 561 791 IPR022175 -
Phco9g01607 924 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 55 834 IPR045142 GO:0006914
Phco9g01607 924 SMART WD40_4 414 454 IPR001680 GO:0005515
Phco9g01607 924 FunFam Breast carcinoma-amplified sequence 3 333 561 - -
Phco9g01607 924 Gene3D - 332 538 IPR015943 GO:0005515
Phco9g01607 924 SUPERFAMILY WD40 repeat-like 223 513 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01607 Phco-Chr9 37757269 37762542 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01607 9 37757269 37762542 Phco9g01607 9 37757269 37762542 ECH