Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01345 ATGGCGTATAACAGTGGAATGTCCAGCAAGGAGGGTGCTGAAGAGACCCAGCAGCACAAACTGTTTGGTGAAAGTGAAGGCCAAGATTCGGAGAAAGAGAAGAGAAAGGGTGTGGATTTGAGCTCAGGGAGGAGAGAGTGGAAGCCAGTTTTTGATGATGCTTCTATCTCAGAAAGGCCTCTCAAGAAAATCCGCAGCCCCGAACGCCAAAACCCCAATCAACAACCTTCTTCATCATCGCCCTCTATGCTCTCTCTCCAACCTCCTTCATCAAGAATAGTGTTTCCTTTCGCTTTTGAAGGCTCTCAACACCCAATGCCATCATTCCCACACTCATTTGGAACAACAAACTTGCCTCTTTTTCGTCCCCCTCTTCAGCCAACGCAACAAATGATATCGTTTGGATCCCAACCGAACATGGGGTATCCACCATTCCTATGCCCAGATTCCACCATATCAAACCAACCACAGTTCCAACAGCAGCAGCAGCAGTATCAGCAGCAGCAGCAGCAGCAGCAGCTTCTTCAGTATTGGAATGACGCACTCAATTTGAGTCCAAGAGGAAGGATGATGATGATGATGAACCGGTCAGGGCATGAAGGGAGACCAATGTTAAGGCCTCAAGCACAGCCTTTGAATGCTACCAAGCTCTATAGGGGAGTAAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATAGAACTCGTCTCTGGCTTGGAACCTTCGACACTGCTGAAGATGCTGCTATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAAGCAGAACCATCCACACCTGCTCCCGCTTCTTCTTCCAACGAAGGTTCAACGTCAACATCAAGCAAGAACACAAAGCAACCTGAGCCAGTTCCAGAAGAGACCAACACTGAGAGTGAGGACGTGCCACCAACTGAGACATTAGCAGAAGAGAATGCTGAAACCGAGGAAGGAGTTTCACAGCCTCAGGAATTGGTTTGGGGAGAGTGGTTCAATACAATTCCTGCAGGTTGGGGTCCTGGAAGTCCCGTGTGGGATGATTTAGACCCCAACAATAATCTTCTTTTGCATTCACAACTTCCCTTTGTGAATCAAGCTCATCAAGAGTTCCATCATGAAGCCGTCGCTGCTTCTCAGACACAACAAGATAACAACAACACAGAACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCCTTCTTCTGA 1272 0.4796 MAYNSGMSSKEGAEETQQHKLFGESEGQDSEKEKRKGVDLSSGRREWKPVFDDASISERPLKKIRSPERQNPNQQPSSSSPSMLSLQPPSSRIVFPFAFEGSQHPMPSFPHSFGTTNLPLFRPPLQPTQQMISFGSQPNMGYPPFLCPDSTISNQPQFQQQQQQYQQQQQQQQLLQYWNDALNLSPRGRMMMMMNRSGHEGRPMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTPAPASSSNEGSTSTSSKNTKQPEPVPEETNTESEDVPPTETLAEENAETEEGVSQPQELVWGEWFNTIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNQAHQEFHHEAVAASQTQQDNNNTEPGSSSPSCPMRPFF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01345 423 MobiDBLite consensus disorder prediction 315 334 - -
Phco9g01345 423 SUPERFAMILY DNA-binding domain 217 275 IPR016177 GO:0003677
Phco9g01345 423 PRINTS Ethylene responsive element binding protein signature 240 256 IPR001471 GO:0003700|GO:0006355
Phco9g01345 423 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Phco9g01345 423 MobiDBLite consensus disorder prediction 13 66 - -
Phco9g01345 423 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Phco9g01345 423 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
Phco9g01345 423 Pfam AP2 domain 218 266 IPR001471 GO:0003700|GO:0006355
Phco9g01345 423 MobiDBLite consensus disorder prediction 281 344 - -
Phco9g01345 423 Gene3D AP2/ERF domain 217 275 IPR036955 GO:0003700|GO:0006355
Phco9g01345 423 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 369 - -
Phco9g01345 423 MobiDBLite consensus disorder prediction 395 423 - -
Phco9g01345 423 MobiDBLite consensus disorder prediction 1 88 - -
Phco9g01345 423 MobiDBLite consensus disorder prediction 286 313 - -
Phco9g01345 423 MobiDBLite consensus disorder prediction 67 88 - -
Phco9g01345 423 CDD AP2 216 276 IPR001471 GO:0003700|GO:0006355
Phco9g01345 423 FunFam Ethylene-responsive transcription factor 2 216 275 - -
Phco9g01345 423 MobiDBLite consensus disorder prediction 395 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01345 Phco-Chr9 15140011 15141282 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco9g01345 AP2 2.8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01345 9 15140011 15141282 Phco9g01345 9 15140011 15141282 ECH