Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01245 ATGCGTTGGTCTTCCAGCTTCTTTCACACAGCCTCTAGGGTTTTCAATGAGTATCCATCATGGTCCAAGTCTGTTCTTGTTTGCACTGTCATCAGTGGAGGAGGAGCAGTGGCATTTTGCGATGTGAAACCAGAACATGACAATGAAAGTCCAAAAAAGAGGGTGGTGGTGCTTGGAACTGGCTGGGCTGGAACCAGTTTTCTGAAAAATATGAAAAGTACCTCCTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCTTTCACTCCATTGCTACCAAGTGTAACATGTGGCACAGTGGAAGCAAGGAGCGTCGTTGAACCCATTCGCAGTATCACCCGCAAGAGCGGTGTAAATATTCATTTCAGTGAAGCTGAATGCTACAAGATCGATCAAAAGAACAACAAAGTTTTTTGTCGTGCTGTTGGTAAGGACAAAAAGTCTGGTGTCCAAGAAGAATTTTCAATTGATTATGATTACCTAGTAATAGGTATGGGAGGTCGTTCTAATACCTTCAACACACCTGGTGTTGAGGAACATGCCCATTTCCTGAAGGAAGTGGATGAAGCTCTAAAAATCCGTCGGAAAGTGGTTGAACTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCTGTGGAAGAGAAGAAAAGGCTTCTGAGTTTTGTAGTTGTTGGTGGTGGTCCAACTGGGGTAGAATTTTCTGCTGAGCTTCATGACTTTGTACATGAGGATATGGCTCTTTTATATCCTGAACTTAAAGAATACGTGAAGATTACTCTCTTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACTGAATTTGCTGAACTAAAGTTTGCCAGAGATGGCATTAATGTGAAGTTGGGATCTATGGTTGTGAACGTTGGTGAAAACGAAATCACTGCCAAAGAAAGGTCAACTGGTCAAGTTGTTTCCATACCTCACGGAATGGTAGTTTGGTCCACTGGTATTGGTGCTCGCCCTGAACTAGTTGAATTTATGAAACAGCTTGGCCAGATTAACAGACGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTTGGTGATTGTGCCACTATAAATCAGCGTAAAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGGAAAATACTGGAAAATTAGATCTTAAAGAATTCAAAAACGTTGTTGGTGACATTATTGAAAGGTACCCTCAAGTGGACATTTATTTAAAGAAGAACCAAATGAAAGACATGGCTAGCTTGCTAAAGAAATCTCAAGAAAGCGCCATTACAGTGGACATTGAATATTTCAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCCACAGCTCAGGTAGCTGCACAGCAAGGAGTGTATCTTGCAGACTGTTTCAACCGTATGGAGTTGTGTGAGAGATATCCTGAAGGCCCTATCAGGTTCAGAGGAGTTGGTCGCCATCGATTCCGTCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCACTTGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTCTGGTATTCAGTGTATACAAGCAAACAAGTGAGCTGGAGGACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGGCGATTCATTTTTGGTAGGGATTCAAGTCAAATCTAA 1725 0.4249 MRWSSSFFHTASRVFNEYPSWSKSVLVCTVISGGGAVAFCDVKPEHDNESPKKRVVVLGTGWAGTSFLKNMKSTSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRSITRKSGVNIHFSEAECYKIDQKNNKVFCRAVGKDKKSGVQEEFSIDYDYLVIGMGGRSNTFNTPGVEEHAHFLKEVDEALKIRRKVVELFERASLPSLPVEEKKRLLSFVVVGGGPTGVEFSAELHDFVHEDMALLYPELKEYVKITLLEAGDHILNMFDKRITEFAELKFARDGINVKLGSMVVNVGENEITAKERSTGQVVSIPHGMVVWSTGIGARPELVEFMKQLGQINRRALVTDEWLRVEGSDNIYALGDCATINQRKVMEDIAVIFSKADKENTGKLDLKEFKNVVGDIIERYPQVDIYLKKNQMKDMASLLKKSQESAITVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMELCERYPEGPIRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFIFGRDSSQI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01245 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 405 - -
Phco9g01245 574 SUPERFAMILY FAD/NAD(P)-binding domain 52 272 IPR036188 -
Phco9g01245 574 SUPERFAMILY FAD/NAD(P)-binding domain 213 373 IPR036188 -
Phco9g01245 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 379 IPR023753 GO:0016491
Phco9g01245 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Phco9g01245 574 SUPERFAMILY EF-hand 370 460 IPR011992 -
Phco9g01245 574 PANTHER NADH DEHYDROGENASE 46 574 IPR045024 GO:0003954|GO:0006116
Phco9g01245 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 420 573 - -
Phco9g01245 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Phco9g01245 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Phco9g01245 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Phco9g01245 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 348 370 - -
Phco9g01245 574 Gene3D - 450 556 - -
Phco9g01245 574 Gene3D - 42 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01245 Phco-Chr9 12524476 12528802 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01245 9 12524476 12528802 Phco9g01245 9 12524476 12528802 ECH