Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01217 ATGTTTAGATTTTCTTGTTTCCATGCTAATGTCCAAGGCAATAAGGCAAAGAAAACAGTTCAACCTTCTACCGAAGTAATGTTGAAGGCTTTGCAAGATGTTGCCCAAACTCAAGTCTGTCAAGATTCATCTCCAAGCGCATATTCAACCCTTTCGAAAGGACAAGCAGACCAGCAAATAGATGTGACTGGGATTCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGATCAGAGGATCTGAACAGCAAGTTTTCCTTTGAAAATGACAGTCAAGTTAACCAAACTAGACGTCTTAAGAAGAGTCAGTCTCTTCATAGTGGGCTTGACCAAGGCATAAGGGATGGTGATGAAGATCTGGTCCTGTCGTGTGATGGTGCCAAAAGCCACGTTGAGTCAACAATGTCAACTTCCAAAAAGTATCATAATGGAAACCCTGTTGATCAGTATGGAAGCAATCGAAACGCTGAGTTCGCTGGAAGTTCAGGTTTTGCAAATGATAGCTCACTTTTTTCAATTGGAGATCCAACGCCTTCAGATAAAGATGCCCGTGAAGTTTCTGATACTCCTTTATCTGGTGAATATGTTGTTGACATTCCTGACCAGACTTCTGTTCGTGGTAGCGTATCACTAAGGAAGTCACATTCTTTACCCAATATCAGAGCTTCTGTACTTTTTGCTAAAAAAGATGCTTTTAAACATGAATTGTCAAGATCTTCTGATGATCTTCATGCTTTACGCATGAGGCAGAAAGAGGAATTCGTCAACGAGTTTGATGATCAAATAAGGAGAGATCAAGAAAGAGAGAATGACATGGGAAAAACTGAAGATGGTCATATGGACAACCTCTTTGACGATGGTTTCGATTCTTATCTGCTTACTGATTCAGCAAAAGACTGGGTAATGCCAATGACATATGATACAAGTGATGCCAGAACCCTTCAAGGAGATTCCTCAGTTGAATTTCCTAACAAGGGTTTTAAGATTAAGCGCATTGAAGATTGGGTTATTGGTCTGCAGCATTGTGGACCACCTGTAGAGGAAACAAATGAGGATTTGCCTGAAGTTATTAAGCCGTTAGCTGATGTGAGCACAGTAAATGGTGTGACTGCTGCCATTGTAGATCATAAGGCCACTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCTCTGGGGGCTAATGCCACTGCCGCTCAGCTGGCTAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAAGTGCTCAATTTATCTGGAAATGCTATCGTGAGGATAACTGCTGGTGCTCTTCCCCGTGGGCTTCACGCTCTGAATTTGTCTAGAAACAAGATCTCCACTATTGAAGGATTACGCGAACTTACACGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCTCTGAAAGAGCTGTACCTGGCTGGAAACAAGATCAGCGAAGTAGAGGGTCTGCACCGTCTCTTGAAACTAAGCATTCTGGATTTCCGTTTTAACAAGATTTCAACAGCCAAATGCCTAGGCCAACTTGCAGCCAACTATAACTCTTTGCAAGCTATCAACTTGGATGGGAACCCTGCCCAGAAAAACGTTGGAGATGAACAGATGAAGAAATATCTGCAGGGTCTTCTTCCCCATCTCGTCTACTACAATCGGCAGCCTATCAAAGTGAGCACTTTGAAGGATGGAGCAGAACGGTCGGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCAGCCTTAGGTCGGATCGCAAGACCACAAGGAAGAGCAGCCAAGGTGTTGTTGCCTCACGGAGGTCATTGGCCACTTCCACTCATGTTCGCAGAAATGTGGATTCACCAAAAGTATCCAGAGGCAAGCAAGCTCTCCTGCCACCATCTAGAACCAAAGTACCAACCCACAGTCGCTATCAGTTTGAGGCTCCCTCCAATCCCTCCAAAGTATTGAACTTGACATCAGAGCGCGCCATGCGCAAGAGTCGCAGCGAGGGAAATTTTGGAGCTCTGTGA 2064 0.439 MFRFSCFHANVQGNKAKKTVQPSTEVMLKALQDVAQTQVCQDSSPSAYSTLSKGQADQQIDVTGIHISNWDSVERSCRSEDLNSKFSFENDSQVNQTRRLKKSQSLHSGLDQGIRDGDEDLVLSCDGAKSHVESTMSTSKKYHNGNPVDQYGSNRNAEFAGSSGFANDSSLFSIGDPTPSDKDAREVSDTPLSGEYVVDIPDQTSVRGSVSLRKSHSLPNIRASVLFAKKDAFKHELSRSSDDLHALRMRQKEEFVNEFDDQIRRDQERENDMGKTEDGHMDNLFDDGFDSYLLTDSAKDWVMPMTYDTSDARTLQGDSSVEFPNKGFKIKRIEDWVIGLQHCGPPVEETNEDLPEVIKPLADVSTVNGVTAAIVDHKATPGMEAAKRYISSLGANATAAQLANHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDFRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPIKVSTLKDGAERSVRLGMNSHQFDRSLRSDRKTTRKSSQGVVASRRSLATSTHVRRNVDSPKVSRGKQALLPPSRTKVPTHSRYQFEAPSNPSKVLNLTSERAMRKSRSEGNFGAL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01217 687 Gene3D Ribonuclease Inhibitor 370 556 IPR032675 -
Phco9g01217 687 MobiDBLite consensus disorder prediction 589 687 - -
Phco9g01217 687 ProSiteProfiles Leucine-rich repeat profile. 462 484 IPR001611 GO:0005515
Phco9g01217 687 MobiDBLite consensus disorder prediction 134 160 - -
Phco9g01217 687 PANTHER NISCHARIN RELATED 231 666 - -
Phco9g01217 687 MobiDBLite consensus disorder prediction 649 671 - -
Phco9g01217 687 MobiDBLite consensus disorder prediction 607 628 - -
Phco9g01217 687 FunFam Protein phosphatase 1 regulatory subunit pprA 377 558 - -
Phco9g01217 687 ProSiteProfiles Leucine-rich repeat profile. 485 506 IPR001611 GO:0005515
Phco9g01217 687 SMART LRR_sd22_2 505 529 - -
Phco9g01217 687 SMART LRR_sd22_2 438 459 - -
Phco9g01217 687 SMART LRR_sd22_2 483 504 - -
Phco9g01217 687 SMART LRR_sd22_2 460 482 - -
Phco9g01217 687 Pfam Leucine rich repeat 418 473 IPR001611 GO:0005515
Phco9g01217 687 SUPERFAMILY Outer arm dynein light chain 1 409 573 - -
Phco9g01217 687 SMART LRR_typ_2 416 439 IPR003591 -
Phco9g01217 687 SMART LRR_typ_2 460 483 IPR003591 -
Phco9g01217 687 SMART LRR_typ_2 484 508 IPR003591 -
Phco9g01217 687 ProSiteProfiles Leucine-rich repeat profile. 440 461 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01217 Phco-Chr9 11768885 11771259 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01217 9 11768885 11771259 Phco9g01217 9 11768885 11771259 ECH