Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01153 ATGTGTGAAACAACGCCCTCTTCCTCTGCCTCTGCGCTCCTCAGAGCAACCACGCCCAAACTCCTCTTTTCCTCACCTTCTAGAACCTTCGCTTTTCCTCCTTCTTTCACTCCCTACTCTTCCCGTAACTCCCTCCGCTCCTCACTCCCGCAGTGGAGCCACGGCCTCCGTCGCGTCTCTCCGCTCACTCTCCTTCGTCCAATCAGAGCCGTCGCTCCCCCCGTCGAACGCTTCCACCGCGAAATCGCTAACATGGCCGAAGAAAATCCTTTCAAGGGAAACTTGACTAGTCTCCCCAAGCCAGGTGGTGGCGAGTTTGGAAAGTTCTACAGTCTTCCTTCCCTCAATGATCCCAGAATTGACAGGTTACCATACTCCATCAGAATTCTACTTGAATCTGCCATTCGTAATTGTGACAATTTTCAAGTAAAAAAAGAAGATGTAGAGAAGATTCTTGCCTGGGAAATAAACTCTAATAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGTGTTCTCTTGCAGGATTTTACTGGAGTGCCAGCTGTTGTTGACCTGGCTTGCATGCGCGATGCTATGAATAAGCTTGGCAGTGATTCAAATAAGATCAATCCTTTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTGGACGTTACAAGGTCCGAAAATGCAGTGCAGGCCAATATGGAGCTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAACTGCATTCCGTAATATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGAAGGGTTGTATTCAACAATGAGGGCCTCCTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGACGGGCTTGGTGTTGCTGGATGGGGAGTTGGAGGTATTGAAGCTGAGGCAGCAATGCTTGGTCAGCCTATGAGCATGGTTTTGCCTGGTGTTGTTGGGTTCAAGTTGTCTGGAAAACTACGCAACGGTGTTACAGCAACAGACTTAGTTCTAACTGTGACTCAAATTCTCCGAAAGCATGGTGTTGTGGGGAAGTTTGTTGAATTTTATGGTGATGGTATGGGTGAATTATCTTTGGCTGATAGGGCCACTATTGCTAATATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCATGTTACATTGCAATATCTCAAGCTAACTGGACGGAGTGATGAGACTGTGGCCATGATAGAGTCTTATCTCAGGGAAAACAAAATGTTTGTTGACTATAATGAGCCTCAACTAGACAGAGTGTATTCATCATATCTTGAATTAAACCTTTCCGATGTTGAACCATGTATTTCAGGACCGAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGACTGGCATGCTTGTCTTGATAACAATGTTGGGTTTAAGGGGTTTGCTATACCAAAAGAAGCACAAGGAAAAGTCGCAAAGTTTGATTTTCATGGGCAGCCAGCAGAGCTCAAGCATGGCAATGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAATCCTAGTGTTATGCTTGGGGCTGGTCTTGTCGCAAAAAAGGCTCATGAACTTGGTTTGCAGGTCAAGCCTTGGGTTAAAACAAGTCTTGCTCCTGGCTCTGGAGTTGTTACAAAGTATCTACACCAAAGTGGACTGCAAAAATATCTAAACGAACAAGGTTTTCATATAGTTGGTTTTGGGTGTACTACTTGTATTGGCAATTCAGGAGAGCTGGATGAATCCGTTTCTTCTGCCATCTCTGAGAATGACATTGTAGCAGCTGCTGTACTGTCTGGGAACCGTAATTTTGAGGGCCGAGTACATCCATTGACAAGGGCTAACTACCTTGCCTCTCCTCCTCTTGTTGTTGCTTATGCACTTGCTGGCACGGTTGACATTGATTTTGAGAATGAGCCAATTGGGACAGGGAAGGATGGAAAGAATGTGTACTTGAGGGATATCTGGCCATCTACTGAAGAAATTGCTGAGGCTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATACGAGGCTGTTACCAAAGGGAACCCCATGTGGAATCAACTACAAGTTCCTGCTGACACTCTCTACTCATGGGACCCCAAGTCAACATATATCCATGAACCTCCATACTTCAAGAACATGACCACGGATCCTCCAGGACCTCATGGTGTAAAAGATGCTTATTGCCTACTGAATTTTGGTGACAGTATAACCACTGATCATATTTCTCCTGCTGGAAGCATTCACAAGGATAGTCCTGCTGCTAAATACCTTCTTGAGCGGGGGGTGGAACGCAAGGATTTTAATTCTTATGGAAGCCGTCGTGGCAATGATGAAGTGATGGCAAGGGGAACTTTTGCCAACATTCGCCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCAAAGACAATTCACGTTCCAACTGGGGAGAAGCTGTATGTGTTTGAGGCAGCAATGAGATACATGGCTTCTGGGCAAGACACCATTGTGCTGGCGGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCTGCCAAGGGTCCAATGCTACTGGGAGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGCAGTAATTTGGTAGGAATGGGTATTATTCCTCTTTGCTTCAAATCCGGTGAGGATGCAGACACATTGGGATTAACTGGTCAAGAACGTTATACAATTGACATCCCAAGTAAAATCAGTGAGATTAGGCCTGGCCAAGATGTGACAGTCACAACCGATAATGGAAAATCTTTCACCTGTACAGTACGCTTTGACACTGAGGTCGAACTTGCTTACTTCAACCACGGAGGCATACTTCCATATGTCATAAGAAACCTCATCAAGTAG 2946 0.4525 MCETTPSSSASALLRATTPKLLFSSPSRTFAFPPSFTPYSSRNSLRSSLPQWSHGLRRVSPLTLLRPIRAVAPPVERFHREIANMAEENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDVEKILAWEINSNKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRENKMFVDYNEPQLDRVYSSYLELNLSDVEPCISGPKRPHDRVPLKEMKADWHACLDNNVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGNVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLHQSGLQKYLNEQGFHIVGFGCTTCIGNSGELDESVSSAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFENEPIGTGKDGKNVYLRDIWPSTEEIAEAVQSSVLPDMFRSTYEAVTKGNPMWNQLQVPADTLYSWDPKSTYIHEPPYFKNMTTDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVERKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTIHVPTGEKLYVFEAAMRYMASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGQERYTIDIPSKISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIK 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01153 981 ProSitePatterns Aconitase family signature 2. 583 596 IPR018136 -
Phco9g01153 981 Gene3D Aconitase, domain 3 457 680 IPR015931 -
Phco9g01153 981 Gene3D Aconitase, domain 3 88 456 IPR015931 -
Phco9g01153 981 Gene3D Aconitase, domain 4 746 981 IPR015928 -
Phco9g01153 981 ProSitePatterns Aconitase family signature 1. 517 533 IPR018136 -
Phco9g01153 981 PRINTS Aconitase family signature 456 470 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 298 313 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 374 387 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 231 244 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 255 263 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 284 297 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 360 373 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 521 532 IPR001030 -
Phco9g01153 981 PRINTS Aconitase family signature 583 596 IPR001030 -
Phco9g01153 981 NCBIfam aconitate hydratase AcnA 107 980 IPR006249 -
Phco9g01153 981 SUPERFAMILY LeuD/IlvD-like 721 980 - -
Phco9g01153 981 CDD AcnA_IRP_Swivel 758 928 IPR044137 -
Phco9g01153 981 FunFam Aconitate hydratase 89 456 - -
Phco9g01153 981 Pfam Aconitase C-terminal domain 781 908 IPR000573 -
Phco9g01153 981 FunFam cytoplasmic aconitate hydratase 457 680 - -
Phco9g01153 981 FunFam Aconitate hydratase 744 981 - -
Phco9g01153 981 SUPERFAMILY Aconitase iron-sulfur domain 103 717 IPR036008 -
Phco9g01153 981 Gene3D - 681 742 - -
Phco9g01153 981 CDD AcnA_IRP 170 654 - -
Phco9g01153 981 Pfam Aconitase family (aconitate hydratase) 149 652 IPR001030 -
Phco9g01153 981 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 84 979 IPR006249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01153 Phco-Chr9 10769766 10780794 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01316 10 35552564 35560836 Phco9g01153 9 10769766 10780794 PCT