Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01149 ATGAACAACGCTCACACGATGCGCGTGACATTCACCGTGGCCACAGTAGCCGTTGCAGCTGCTATGATATCCATTTTCTTCTACGCGCGAAGGCGCAAGAAGCGCGACTCTTCTTCTAGTTCGTGCTATTTGCATTCCGAACGGAAACCACAGAGTGCATTCAAGCGCGTTTTATCGGATAATTCCTACACTCCGTTCAAGCACCTCAGCAACGACGAGAATGCTTCGAATTCGCATCCGTTTGAGGCGGAGATTACAGCATTGTTGAAAACTCCTAAGTCTGAAATTGAATTTGGAACTGAGATAGTGGACATGGAAATGAAGGATTCATATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGTGTTGAGCGAAGAGAGCTTTTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTTTCTAGGCTTTACGGCATTAGTTCAGATTTCTACTCGGGAGAAAGATTATTTGGTTGACGCAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCTGTTTTCGCCAATCCTTCAATTTGTAAAGTGTTCCATGGTGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCACATATACGTTGTTAACCTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGATTGGAGACAGCGTCCTCTCTCAGCAGAAATGGTACATTATGCCCGAACAGATGCACACTTTCTGTTGTATATTGCAAATTGTCTGATCAATGAACTCAAACAACTGGACAATGAAAACTCTTGTTCCAGTGACAAGTTCCATTTTGTTCTTGAGGCTAGTCAGCGTTCAAACACAATATGTTTACAACTTTTCACAAAGGAGATTGAAGCATATCCTGGTGAATCTTCTGCATTATCATTATTTTCTCGTCAAGTGAGTAGTCATGGTTGTCCGTCTATATCAAATGAAACTCAGATTATTGTGAGGCAACTATGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTCTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTCACTCTGAAATACCCAAGACCATAACCCAGGCTGACATCAATATGGAAATGGGTGTGAACTCCTTCATCATTTCCCCATCTCCTGTTGTTTGCAGTCACCTGAGTGATATCTATCATATTCTCGCAAACAAGTTGGTTAATGATGATGATATTTATTCAGTGATTCTTCAGAAGTGTATAGGTCAAAATGGGAGTTGTCCGCTTTCTATATTTAATTATGCTTTGTTGATAAACAGTAACCTAAGACCTAATTTAGCCCATAAACAACTGGGCCCAAAACATCCTAAACAATTTTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCTTGCAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGACGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGGCCAGGATCCCCCAACTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGACAATGACTTCTATATCCAGAGCAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTATTTACGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTACTACTTTGCGTGGATTGCCATGAGGTCGCACATGCTGCTGCAGAAAAGTACAAGAGGAAAATAGCTGTTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCAAGTCAAAAGACTGAAAAACAAATTGAAGAGAGAGGTGTATCTCCATTACAATTACGAACAGCTGCTATGGCTCTTTTAAGCCATGGACCAAGAATGCCTCTAAATCGCCGAGAAGAACTAACTGAGATTATAAAGAGATATTATGGAGGAAGGGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACGCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTACAGGGAATACTGTAACACTGCTAGAACAGAATAATCATATTGGTTGCTCACCCAGAATGAGTAATGTGGATGACTTAAAAGTTGATGCTCATGATGGCTCATATGCAGATGAAGTAGATACAGAACTTTTTATGAGAAAAGATGATTTTAGAAACTCCATTTCAGCTTCTGATATTACAGTTAATGGACCTGGCTCTGCAACTTTGAATAAAAATGCGATTACAGTTGAAACTGCAGATTGCAATGAAGGCGGCGACTCTGCTGTAAATGTTGATAACAGCAGTCTGAGCAGAAGGGAAACTAATGGACTTAGTAACTTGTCTTGTTCTCCCAATGATGAAAAACCTATACATACCGAACACAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTGAGGGTGTATGGTGAAGATGGTATTCGAGACTTTTGTCAGAGATGGAGACAAGTATTTGTGGACGCTGTAAAACCACGTTTTCTTCCTGTTGGTTGGGATGTAAAACACAGTGGAAGAAGGGAGTTCGGGGAGTTCAGTGCGTACAAACCTAAGAGAGCGGCTTCTGCAACTGGAGAGTAA 2784 0.4091 MNNAHTMRVTFTVATVAVAAAMISIFFYARRRKKRDSSSSSCYLHSERKPQSAFKRVLSDNSYTPFKHLSNDENASNSHPFEAEITALLKTPKSEIEFGTEIVDMEMKDSYVWVHTETQLKELVDVLSEESFFAVDTEQHSLRSFLGFTALVQISTREKDYLVDAIALHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDNENSCSSDKFHFVLEASQRSNTICLQLFTKEIEAYPGESSALSLFSRQVSSHGCPSISNETQIIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIPKTITQADINMEMGVNSFIISPSPVVCSHLSDIYHILANKLVNDDDIYSVILQKCIGQNGSCPLSIFNYALLINSNLRPNLAHKQLGPKHPKQFSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVGQDPPTIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYLRRVVHPSQKTEKQIEERGVSPLQLRTAAMALLSHGPRMPLNRREELTEIIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFSFKHSTGNTVTLLEQNNHIGCSPRMSNVDDLKVDAHDGSYADEVDTELFMRKDDFRNSISASDITVNGPGSATLNKNAITVETADCNEGGDSAVNVDNSSLSRRETNGLSNLSCSPNDEKPIHTEHNSKLSLLGHGPHGKQVVEHLLRVYGEDGIRDFCQRWRQVFVDAVKPRFLPVGWDVKHSGRREFGEFSAYKPKRAASATGE 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01149 927 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 48 316 - -
Phco9g01149 927 Gene3D - 48 316 IPR036397 GO:0003676
Phco9g01149 927 Pfam 3'-5' exonuclease 111 278 IPR002562 GO:0003676|GO:0006139|GO:0008408
Phco9g01149 927 MobiDBLite consensus disorder prediction 813 839 - -
Phco9g01149 927 CDD Rrp6p_like_exo 107 300 - -
Phco9g01149 927 Gene3D HRDC domain 332 434 IPR044876 -
Phco9g01149 927 MobiDBLite consensus disorder prediction 811 840 - -
Phco9g01149 927 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 40 920 IPR045092 GO:0000175|GO:0000467
Phco9g01149 927 SMART 35exoneu6 111 279 IPR002562 GO:0003676|GO:0006139|GO:0008408
Phco9g01149 927 SUPERFAMILY HRDC-like 339 393 IPR010997 GO:0000166|GO:0044237
Phco9g01149 927 SUPERFAMILY Ribonuclease H-like 49 283 IPR012337 -
Phco9g01149 927 Pfam HRDC domain 347 386 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01149 Phco-Chr9 10733975 10741130 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01149 9 10733975 10741130 Phco9g01149 9 10733975 10741130 ECH