Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01080 ATGGGGGTGCCTACGTTCTATAGATGGTTGACTGACAAATATCCCAAGGTGGTGCAAGATGTAGACCCTGCCATGCAAGACCCAAATGGAGTGAAATATGATAACTTGTATGTTGACATGAATGTCATCATTCATCCTTGCTTTCACCCTGATGATCATGATAACAATATTCCATTTCCAATTACATTTGAAGATGTGTTCAGAAATGTGTTTGACTACATTGATCGACTTGTTGACACTGTTAGGCCTCGCAGGCTCCTTTACATGGCTATTGACGGGGTTGCCCCACGTGCCAAAATGAACCAGCAGCGATCAAGACGTTTTCGAGCCGCTAAGGACAATGAAATTCATGAAGCTGAGGAAGAGAGGCTAAGGAAACAATTTGAAATTGAAGGGAAACAAGTTCTTCCTAAACAAGAAACCGAAGTAGCAGATTCCAATATTATAACACCAGGCACTGAGTTCATGCATGAACTCTCAAAGGCACTTAAAAGCTATATCTCTTCAAGGATAATTTGTAACTCCTTATGGAAGGATATTATGGTAATTCTCTCTGATGCTAGTGTTCCCGGCGAAGGGGAGCATAAGATTATGTCATACATACGCAAACAGCGTAGTCTGCAGGAGTATGATCCAAATACCAGCCACTGTTTATATGGCTCGGATGCTGATCTTATAATGCTTGCAATGGCAACTCATGAGCCCCATTTTTCAATATTAAGAGAGGATGTCTCTGTGCAGCAGCACCCAAAAGTTGCTGCCAAGCCTTTCAAGTTTTTGCACATTTGGTTATTGAGGGAGTATCTTGAGTTAGACATGAAGATAGAAAATCCTCCCAAAACTTGTAGTATTGAGCTTGAGCGGATAATTGATGATTTCATCTTCATGTGCTTTTTTATTGGAAATGATTTTCTGCCCCACATGCCATCTTTGGATATTCACGAGGGGGCTATTGATTTGCTAATGACTGTTTACAAGGAAGAATTCAATACACTTGGAGGATATCTTGTGGACATGAGCAGGGTTGGGGAGAAAAATGCTGCTTTTATGAAGTTATCAAGAGTTGAAAAATTTATACTTAAGGTTGGTACATATGAAGAGAAAATCTTTAAGAGAAGATCTGAAGTAAGAGAACGTAAATTGAAAAGGCTTATTCAAGATAACGAGGAAGCTTTTCGCATAGATTTCGCATATCGCCTATATAATGCTGGTGCATGTGTTCGTCTTAAGCGGGAAGAAACGAATGGAAGAAGTTTCTCGGATCTTGACAATGGAGATACGTCTGATTGTACTCTTCTGATTAAGAAGGCACCAGATTCAAAGAACTCGTCAGTTTTGGTCAATAAAGTTTCTGCTACACATGCTGAAATTGAGCAAAACACAAAGGATTTAAAAGATGAACTGAAGAAAAGTATTAGAAAAAAATGTGACTTACTTTGGAGTGAAGATTTCCTAATTGACAAGGTCCAGAAGTACACCGAAGGATTGGTATGGGTTCTTCAATACTATTTTTCAGCAGTTGCTTCGTGGAGATGGTTTTACCCGTTCCACTATGGTCCCTTTGCTTCGGACTTAAAGGGCATGGGTCAAGTAAGAGTAAAATTTGAGAAAGGTGACCCATTCTTACCACTTGATCAACTTTTAAGTGTCCTCCCCCCGGCAAGTGCTCATGCACTTCCAAAAGCCTATGCACAACTGATGCTTGATGAGCAATCTAGAGTACTTGACTTTTATCCTCAGGATTTTGAAGTTGACACTGCAGGAAAGCGCTTCACGTCGCAGGAAAAGGAGGCCATAAGAAATTCATTCAAGGCTGATAGCTTGTTTGTTAGAAGCTCTAGCAAATTAGCAGAGAAATTTGGTTCTCTATCTGTTGACCCAAATGCGCCTTGCAAGTTAGACACAAGAATAAGTGATGGCATTGGGGGTACCATAAGCCTTTGCCATGAGTTTGTTGACAAACCTTGCGCTGACATTTGTGACAGCAAAGAAGATCATGTCTTATGTGTCTATTACGAGCTTCCTACTGGTAGTAATCATATTCCTCGTTTACTATCGGGTGTGAAGCTTCCAGAGAAGACAATCTTTGAAGGTGATATCATGGAAACTGAACTGTGGCATGAACGTCAGAAACATTTTAGCCGTTTCGGGAGGGTCCAAAATCAACACAAATGGAGGAGTGAAAACAGGAGCAATACTTCAAGGATTTTCTCAAATGCAAGTAGCCAACATGATAGATGCTTTTCATCGAATGCAAGTAGCCAACATGCAAATGCACCTTCCTTCATTCACAAAAAAGGTGGTGTTGGATGGGGTTTAGGTAGAGGAAGAAAAGTAAATACAGTGAAAAATGAGGGAATTCCATCTCCTTGTCACAAACAACATAATGATGCAGGCTCTTATCATGTAACAACTACACGTGACACCACATCACAACACTTTGTGAATGACTTTAGACAGTTCAGAATATCAGAGTCTGGTCCCTTTCCAAAGTCTTCTAGCAGTTTTAGCCGTAGCATGAATCAGTCAAAAAGTGTTCCTAATCAACAAGCTTCAGAATCTGAGAGGCCTTTTGGTCGGGGACAAGGTAAGTAG 2595 0.405 MGVPTFYRWLTDKYPKVVQDVDPAMQDPNGVKYDNLYVDMNVIIHPCFHPDDHDNNIPFPITFEDVFRNVFDYIDRLVDTVRPRRLLYMAIDGVAPRAKMNQQRSRRFRAAKDNEIHEAEEERLRKQFEIEGKQVLPKQETEVADSNIITPGTEFMHELSKALKSYISSRIICNSLWKDIMVILSDASVPGEGEHKIMSYIRKQRSLQEYDPNTSHCLYGSDADLIMLAMATHEPHFSILREDVSVQQHPKVAAKPFKFLHIWLLREYLELDMKIENPPKTCSIELERIIDDFIFMCFFIGNDFLPHMPSLDIHEGAIDLLMTVYKEEFNTLGGYLVDMSRVGEKNAAFMKLSRVEKFILKVGTYEEKIFKRRSEVRERKLKRLIQDNEEAFRIDFAYRLYNAGACVRLKREETNGRSFSDLDNGDTSDCTLLIKKAPDSKNSSVLVNKVSATHAEIEQNTKDLKDELKKSIRKKCDLLWSEDFLIDKVQKYTEGLVWVLQYYFSAVASWRWFYPFHYGPFASDLKGMGQVRVKFEKGDPFLPLDQLLSVLPPASAHALPKAYAQLMLDEQSRVLDFYPQDFEVDTAGKRFTSQEKEAIRNSFKADSLFVRSSSKLAEKFGSLSVDPNAPCKLDTRISDGIGGTISLCHEFVDKPCADICDSKEDHVLCVYYELPTGSNHIPRLLSGVKLPEKTIFEGDIMETELWHERQKHFSRFGRVQNQHKWRSENRSNTSRIFSNASSQHDRCFSSNASSQHANAPSFIHKKGGVGWGLGRGRKVNTVKNEGIPSPCHKQHNDAGSYHVTTTRDTTSQHFVNDFRQFRISESGPFPKSSSSFSRSMNQSKSVPNQQASESERPFGRGQGK 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01080 864 MobiDBLite consensus disorder prediction 824 864 - -
Phco9g01080 864 Gene3D - 136 332 - -
Phco9g01080 864 Gene3D - 1 135 - -
Phco9g01080 864 CDD PIN_XRN1-2-like 36 269 - -
Phco9g01080 864 Gene3D - 532 619 - -
Phco9g01080 864 MobiDBLite consensus disorder prediction 785 808 - -
Phco9g01080 864 Pfam Xrn1 helical domain 594 700 IPR041412 -
Phco9g01080 864 Pfam Xrn1 helical domain 284 592 IPR041412 -
Phco9g01080 864 PANTHER 5'->3' EXORIBONUCLEASE 1 827 IPR027073 -
Phco9g01080 864 PIRSF Exonuclease_Xrn2 592 863 IPR017151 GO:0004534|GO:0005634|GO:0006139
Phco9g01080 864 PIRSF Exonuclease_Xrn2 247 490 IPR017151 GO:0004534|GO:0005634|GO:0006139
Phco9g01080 864 PIRSF Exonuclease_Xrn2 481 595 IPR017151 GO:0004534|GO:0005634|GO:0006139
Phco9g01080 864 PIRSF Exonuclease_Xrn2 1 255 IPR017151 GO:0004534|GO:0005634|GO:0006139
Phco9g01080 864 Coils Coil 447 474 - -
Phco9g01080 864 MobiDBLite consensus disorder prediction 826 856 - -
Phco9g01080 864 Pfam XRN 5'-3' exonuclease N-terminus 1 243 IPR004859 GO:0003676|GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01080 Phco-Chr9 9596915 9604475 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01080 9 9596915 9604475 Phco9g01080 9 9596915 9604475 ECH