Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01041 ATGCCTCGGGGGAGAGCAAATTCTTCATCAGCTGCTAAGCCATCTGACTCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAGGAAGCAATGGAAGAAGAAATTGAGTATGAAGAAGTAGAAGAAGAAGTGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAAGAGGAGGAGGAGGAGGACCCAGAGGAGGTAGAAGTAGAAGAGGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAGATTGAAGAAGTGGATGAAGATGATGCCATGCAAAACCATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGATGAGAAGAAAAAGCATGCCGAACTCCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGCGGCATTCCTCATGATGTCTCAAATGAGGATTTGAAATCTTTTTGCGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAACATCCCGGCGAGAACAAGGGATTTGGTTTTGTGACATTTAGAAGTGTGGAATTGGCTTCTAAAGCCATCGAGGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAAATGTTCTACGTCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGTGGAAGATCTGAGGAAGATTGTATCCGAGATTGGACCTGGAGTTACTGGTGTGGAACTTGTCAAGGATATGAAGAACACCAACAACAACCGTGGCTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAGTATTCTAAGCTAAAGATGATGAGCCCAACATTTAAGCTAGGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCGAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATAACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAATGTTGGAGTGCTCTCTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGTATCAAACTCACAGAAGCCGGGACCAGGATTGCTTCCAAGCTATCCACCACATGTCGGCTATGGTTTGGTTGGGGGTGCCTACGGTGCACTTGGTGCAGGATATCCTGCTCCAGGTCTTGCACAGCCCATGCTATATGGAGGAGGTCAAGGTCCCGCTGGAATGGCCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCGCCATCCTCACATCATAGAGGTGGCCGGAGTGGTGGCAGTGGGGGTGGCAACAGGAATGCTGGCAGTTCTAGTAAGGGAAGGCACAACAATGACGGTGGTCAAGGGCGCAGATACCGCCCATATTAG 1536 0.4577 MPRGRANSSSAAKPSDSEKPVESDEKVDFEEENDPEEAMEEEIEYEEVEEEVEVEEIEEEVEEEEEEEDPEEVEVEEEEEEEEEEEEEEEEIEEVDEDDAMQNHSSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDVSNEDLKSFCERIGEVAEVRVMKGKHPGENKGFGFVTFRSVELASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGVEDLRKIVSEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMSPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQMLECSLAKPQSDQKSGVSNSQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYPAPGLAQPMLYGGGQGPAGMAMMPMLLADGRIGYVLQQPGMQPQAPSSHHRGGRSGGSGGGNRNAGSSSKGRHNNDGGQGRRYRPY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01041 511 MobiDBLite consensus disorder prediction 463 511 - -
Phco9g01041 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Phco9g01041 511 MobiDBLite consensus disorder prediction 27 101 - -
Phco9g01041 511 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 294 403 - -
Phco9g01041 511 Gene3D - 212 291 IPR012677 -
Phco9g01041 511 MobiDBLite consensus disorder prediction 1 118 - -
Phco9g01041 511 Coils Coil 38 98 - -
Phco9g01041 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 293 IPR000504 GO:0003723
Phco9g01041 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 374 IPR000504 GO:0003723
Phco9g01041 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 272 IPR000504 GO:0003723
Phco9g01041 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Phco9g01041 511 MobiDBLite consensus disorder prediction 102 118 - -
Phco9g01041 511 MobiDBLite consensus disorder prediction 381 403 - -
Phco9g01041 511 SUPERFAMILY RNA-binding domain, RBD 128 296 IPR035979 GO:0003676
Phco9g01041 511 CDD RRM_SF 133 205 - -
Phco9g01041 511 Gene3D - 292 401 IPR012677 -
Phco9g01041 511 SMART rrm1_1 132 205 IPR000504 GO:0003723
Phco9g01041 511 SMART rrm1_1 212 289 IPR000504 GO:0003723
Phco9g01041 511 SMART rrm1_1 306 379 IPR000504 GO:0003723
Phco9g01041 511 FunFam RNA recognition motif-containing protein 21 211 - -
Phco9g01041 511 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 212 292 - -
Phco9g01041 511 Gene3D - 58 211 IPR012677 -
Phco9g01041 511 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 503 - -
Phco9g01041 511 MobiDBLite consensus disorder prediction 485 499 - -
Phco9g01041 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Phco9g01041 511 SMART rrm2_1 306 379 IPR003954 GO:0003676
Phco9g01041 511 SMART rrm2_1 132 205 IPR003954 GO:0003676
Phco9g01041 511 SUPERFAMILY RNA-binding domain, RBD 299 399 IPR035979 GO:0003676
Phco9g01041 511 MobiDBLite consensus disorder prediction 381 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01041 Phco-Chr9 8934492 8938828 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01041 9 8934492 8938828 Phco9g01041 9 8934492 8938828 ECH