Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01024 ATGCTTATCTTCTTCCTCGAATATACTGCACCGTTTTCTGACGCCAATACAACCGAATGGGGCTGTTGTTGTCTCAGCTCCAACATATCATTTCAGAGACTCTTTCGTTATTCAGTTGGATTAAGCAACAAGATGAAGGTTCAGGAAACGAGGTCCCATGTTCATGCACCTGGGGAAGAAGAGAAGGTTATGACAAGGAAGCAGAAAGCTGAGTCCAAGGCACATGAAGTGGAGCATTCTCCTAAGAAGGCCAAGGTGGAAAATGAAGATGGTCATGTCAACGGAAAAACTGTAGCTGATGTTGCAGATGAATATGATGAGTTTTGCAAAGCCACAAACGAGCACCTTCCTTTGGAGCAAATGAAAGAGATTCTGGAGGCTAATGGCCTTGATTCTTCTGGCTCTGATCTTGAAATTACACGAAGATGCCAAGACTTGCTGTTTTATGGTGCACTGGACAAGTGCTCTGTTTGCAATGGAAGTTTGGAGTTTGATGGCAGACGTTATGTTTGCAGAGGGTTCTACAGTGAGTGGGCTAGTTGCATTTTCAGCACCAGAAACCCTCCAAGGAAACAGGAACCCATTAAGCTACCTGATTCTGTTCAGAACTCTCTGCCTTCAGATTTGCTAAAGAAATATCAGGATCCAAGTCACAGGCCACATAGGGATCTAGGCTTAGCTGAAAAACCGTTTACCGGGATGATGATATCTCTGATGGGTCGTCTTACTCGGACACATCATTATTGGAAAACAGCTATTGAAAAGCATGGAGGGAAAGTGGCAAACTCTATACTTGGGGCTACTTGTTTGGTAGCTTCACCTGCTGAGCGAGAACGTGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGAGGTATACCAGTGGTTAGGGAGGCTTGGTTGGTTGACAGCATTGAAAAGCAAGAACCACAGCCTTTGGAAGCTTATGATCTTGCTTCTGATCTTTCTGTGGATGGCAAGGGAATTCCCCAGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCAGCAGAACTCAAACTTTATGGGAAGAGAGGGGTCTACAAAGATACCAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAAATGGGATATTATACAACTGTGCCTTCTCCCTTTGCGACCAAGGACGAGGACTGAATGACTACTGTATCATGCAACTGATCGTTGTCCCAGAAAATCGTTTGCATATGTACTTTAAGAAAGGGAGAGTTGGCCATGATCCAAATGCAGAGGAGCGATTGGAAGAGTCGGACAATGTGGACAGTTCTCTGAAAGAGTTTGCGAGACTCTTCGAGGAAATAACAGGAAATGAGTTTGAACCTTGGGAAAGAGAGAAGAAGTTCCAGAAAAAGCCATTGAAGTTCTACCCCATAGACATGGATGATGGAGTTGAAGTTAGACACGGAGCACTAGGTCTTCGGCAGCTGGGGATAGCAGTAACACACTGTAAACTTGAGCCATTGGTTGCAAATTTTATGAAAGTTTTGTGCAGCCAGGAGATTTACAAGTATGCATTGATGGAGATGGGTTACGACTCTCCGGACCTTCCAGTAGGAATGGTTACAAATCTTCATCTGAAAAGATGTGAGGACGTTCTCTTAGAATTCATAGACAAGGTGAAATCATTGAAAGAAACTGGGCTTAAGGCTGAGGCTGTTTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCATTCCACAAGGCCTTTCAATTTTAGAGATTATCATGAGATTGCAGACCATGCTGCGGCTGCCTTGGAGGGGGCGAGAGACATAACCCTCGCTTCTCACCTCATAGGAGACATGACTGGCTCAACTATCGATGACCCATTATCAGAGACATACAAGAAATTGGGATGCTCAATTTCTCCCCTGGACAAAAGTTCAAATGATTATCAGATGATTGTGAAATATCTTGAAACTACTTATGAGCCAGTCAAAGTTGGTGACATAGATTACGGGGTGTCAGTGGAAAACATTTTTGCGGTGCAAACAGGTGGTTGCCCTTCTTATGAAGACATAGTTAAACTGCCAAATAAAGTTCTTTTATGGTGTGGATCACGAAGCTCAAACCTTTTGAGGCACTTGCACAAGGGATTCCTGCCAGCAATATGCTCACTACCGGTTCCGGGTTATATGTTTGGCAAAGCTATTGTCTGTTCCGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCTCTAGGGAATGAGATTACCAACTTTAAAAGCCCACCCGAGGATACTTCATCTTTGGAGGAAAAGAAGCTTGGAGTTAAGGGGCTTGGGAAGAAGAAAACAGATGAATCAGAACACTTTGTTTGGAAAGATGATATTAAAGTTCCTTGCGGTAAACTAGTTGCCTCAGATCATCAAGATAGCCCCCTGGAATATAACGAGTATGCTGTCTACGATCCTAAACAGGCACGCATAAGCTACTTGGTGGGAGTGAAGTATGAAGAGAAAGGTGTGGAGTTTGACACGGCTGAGTAA 2571 0.4419 MLIFFLEYTAPFSDANTTEWGCCCLSSNISFQRLFRYSVGLSNKMKVQETRSHVHAPGEEEKVMTRKQKAESKAHEVEHSPKKAKVENEDGHVNGKTVADVADEYDEFCKATNEHLPLEQMKEILEANGLDSSGSDLEITRRCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCIFSTRNPPRKQEPIKLPDSVQNSLPSDLLKKYQDPSHRPHRDLGLAEKPFTGMMISLMGRLTRTHHYWKTAIEKHGGKVANSILGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLVDSIEKQEPQPLEAYDLASDLSVDGKGIPQDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFERNGILYNCAFSLCDQGRGLNDYCIMQLIVVPENRLHMYFKKGRVGHDPNAEERLEESDNVDSSLKEFARLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAVTHCKLEPLVANFMKVLCSQEIYKYALMEMGYDSPDLPVGMVTNLHLKRCEDVLLEFIDKVKSLKETGLKAEAVWTDFSQRWFTLMHSTRPFNFRDYHEIADHAAAALEGARDITLASHLIGDMTGSTIDDPLSETYKKLGCSISPLDKSSNDYQMIVKYLETTYEPVKVGDIDYGVSVENIFAVQTGGCPSYEDIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITNFKSPPEDTSSLEEKKLGVKGLGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDPKQARISYLVGVKYEEKGVEFDTAE 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01024 856 CDD WGR_PARP1_like 367 473 - -
Phco9g01024 856 Gene3D - 77 150 - -
Phco9g01024 856 CDD BRCT_PARP1 231 306 - -
Phco9g01024 856 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 85 223 IPR047572 GO:0008270
Phco9g01024 856 SUPERFAMILY ADP-ribosylation 630 847 - -
Phco9g01024 856 SUPERFAMILY WGR domain-like 342 471 IPR036930 -
Phco9g01024 856 ProSiteProfiles BRCT domain profile. 226 318 IPR001357 -
Phco9g01024 856 FunFam Poly [ADP-ribose] polymerase 488 630 - -
Phco9g01024 856 Gene3D - 151 214 IPR038650 -
Phco9g01024 856 CDD parp_like 493 844 - -
Phco9g01024 856 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 493 629 IPR036616 GO:0003950
Phco9g01024 856 ProSiteProfiles PARP alpha-helical domain profile. 493 612 IPR004102 GO:0003950
Phco9g01024 856 Pfam Poly(ADP-ribose) polymerase catalytic domain 641 844 IPR012317 GO:0003950
Phco9g01024 856 Pfam WGR domain 377 456 IPR008893 -
Phco9g01024 856 Gene3D BRCT domain 226 323 IPR036420 -
Phco9g01024 856 SMART BRCT_7 228 308 IPR001357 -
Phco9g01024 856 FunFam Poly [ADP-ribose] polymerase 631 847 - -
Phco9g01024 856 Pfam PADR1 (NUC008) domain 141 191 IPR012982 GO:0008270
Phco9g01024 856 Gene3D - 631 847 - -
Phco9g01024 856 SMART WGR_cls 377 460 IPR008893 -
Phco9g01024 856 Gene3D - 490 630 IPR036616 GO:0003950
Phco9g01024 856 Pfam BRCA1 C Terminus (BRCT) domain 228 305 IPR001357 -
Phco9g01024 856 Pfam Poly(ADP-ribose) polymerase, regulatory domain 494 627 IPR004102 GO:0003950
Phco9g01024 856 ProSiteProfiles WGR domain profile. 366 466 IPR008893 -
Phco9g01024 856 SUPERFAMILY BRCT domain 228 326 IPR036420 -
Phco9g01024 856 SMART PADR1_2 139 192 IPR012982 GO:0008270
Phco9g01024 856 MobiDBLite consensus disorder prediction 50 87 - -
Phco9g01024 856 PANTHER DNA LIGASE 48 844 - -
Phco9g01024 856 ProSiteProfiles PARP catalytic domain profile. 621 852 IPR012317 GO:0003950
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01024 9 8717417 8722039 Phco9g01024 9 8717417 8722039 ECH