Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01008 ATGGGCAGCGATGGTCGGCGACGTGATCGGAGAGACACCAGAGCATCGAAGAAGCGGAAGCTGAACCGCAGCCCCGAGGATGAGCTCGAAGCTAAATTAGGGTTCGATCTGTTTTCAGAGGGCGAAAAGCGGCTCGGATGGCTACTCACTCTTGCATCCTCATCTGTGGAGGATGAAAACAGTTACAAAGTATACAGTTGTGTCGATCTTTACTTTGTTACACAGGATGGCTCTTCATTCAAGTCAAAATTCAGATTTCGGCCTTACTTTTATGTAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGAAGACGTTATGAAGGTCAGATTGCTGATATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTACAACAATTGATGGATGTGAAGAAAGACCTGATGCCTTCAGTTGAAAGAAATAAGGCTAAATCTGATACTACAGAAGCCTTTGTGTCCATGTCAACAGAAAGAAGAGAACATAAACCTCAGGATTTTCTAGATTGCTTGACTGATCTTCGAGAATATGATGTTCCGTATCATGTTCGCTTTGCAATTGATAGTGATATACGGTGTGGTCAGTGGTATGATGTTGGAGTGTCTAATAACGGAGTAACACTTGAGAAGAGGACAGATCTTCTACAGCGCGCTGAAGTTCGTGTTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCATACATGATAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTCGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTTTCTCATATGCAAGACGTGAAACCTGGTATCTATGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCTTGGGTTCAATATGAGTGATGAATTGGGATTCAAATGTGACGCAAATCAAGGGGAATGTCGGGCTAGATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGTCTGAAGGCTGTTACAAAAGCAAAGTTGGGATATGATCCATTGGAGGTGAATCCTGAAGACATGGTTCGATTTGCAAAGGAAAAGCCCCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGTCAACTTATTACTTATATACAACATATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCTATGCCACCAGATGAGGTTTTGCGTAAAGGTAGTGGAACCCTCTGCGAAATGTTGCTTATGGTGCAGGCATACAAGGCCAATGTTATATGCCCTAACAAACACCAATCCGATCCAGAGAAGTTTTATAATAATCGTCTTCTTGAGAGTGAGACTTACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTTTTCAGATCTGATATCCCATCTAGTTTTACACTAGAGCCATCTGCTTATCAGCAACTGATCAACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGTAAGATGGATTTGGAATCTGTTTCTAATTATAATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTACAATTACGAGATGCACCAATGCGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCGTCAATTGTTACTGATGAAGTCTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGTAAGCTTGAGTGGGTCTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTACTATGCTTTAAAGACACAGATTGAATCAGAGTTTGTTGATGATTCTGAGAACAACAAATCCTTATCCCGCTATTCTGAGAAGAGTTCATCAAAATCTTTTCTTGACCTTCCCAAGACCGAGCAACAATCAAGACTGAAAGACCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTCGACAAACCTGTAACTGAAGTTCGTGAAGCGGGGATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATACGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAAGAAGCACAGGATATGGTTGTGCTCTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTATTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATAATCCAGAATGCTCGCTTGCTAGTAGAAAAAATAGGAAAACCACTTGAACTAGACACAGATGGTATTTGGTGTGCACTACCGGGATCCTTTCCAGAAAATTTTACTTTTAAAACAGAAGACTCAAAGAAGAAGTTTACAATATCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAATATCAGACACTCACAGATCCAATGAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATATAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGAATTTTAATTAAAAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAACTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAATTGAAGCTAATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACATTAGAAGAATGCTATTCAGCTGTTGCTTCAGTGGCAAACCGCTGGCTTGATCTGCTTGATAACCAGGGAAAGGATATAGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTAGCTGACTTTCTTGGAGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTTGCAAGTGAACCAAAGGGCACACCAGTTAGTGAGCGTGCTATTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATATCCGCAAATGGTGCAAGGTCTCGTTGGAAGTTGCCATTCGTTCGATAATTGATTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTGTCACTATTCCTGCTGCAATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTAGTTCATCCTGATTGGTTGCACAAGAAAGTTCGTGAGAAGGAGGACAGGTTTCGCCAACGGAAATTAGTTGATGTCTTTAAATCAATGAACAGGAATGAACAGTCAAAAAAGCATAATGACTCAAATTGTGTCCCTCTTGTAATGGATGATGAGATTCTTAATGAGTTAGAGGACTTTGGAAACAAGAGTAGGAGTTCTATGCACGGACCTAGACCAATTATAAGGCATTATGAAGCTAATAATGAACAAAATTCAAGGAAGCTCAGTGATCAACAAGATATGGAACAAGAGCATAGTAAAGATAATAGCAGCAAGAAAAATGTACTTTCACCATTACAACAAAATGAAACATGTGAAAATGTAGAGAAAACTGTTGATTATCAGGGATGGCTTCAAGTAAAGAAGCGAATGTGGAAAAATATCCTGGAAAGGAGAAAGAAGCAAAGATTGGAGAAATCAAAGACATCTAATCGTGTAAATGGTGTTTCTGAACAAATGAGTGGTAAGAGGAATCCAGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACGAAGTGTCACTGGCAGATAATACAACTAGTTCCCAGTTCACTGATTGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCCCCAATTAATGAAGAATTTATTGGTAAACATGTTAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACTTATACGAGGTCTCAATTAATGAAATTCAATATGGGGAAGTAAGCAAAAAACTTGCAACTCTTCTAGCGGATCCTGATGTTGAGGGAATATATGAAACTAAGATGCCACTGGAGTTTAATGCAATAGTCCAGCTTGGTTGCGTATGTAAGGTGGACAAGACTGCTAATAAACGTAGTCTACAAGAACCATGGAGTTTGAGTGAATTGCACATGAAGACTACCACAGAATGTGTTTATCTTGAACAATCTTTATCCTTCTTTTATTTGTACCACAGCATCTCTGAGGGGCGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATATCTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATCTCCGAATTTTCTTGAAAGACAATTTCATGATGCTTGCCAGACGTTGTCTATTGAGCCACCTCTGAGGAATGACATTAATTTTAAGGTGGACTATGTCACACATGTCAAGGATGCTGAAACAGTGATGCAAAGAGCAATAAATGGTCACAGTCATGGGAGGGAAAATCATGTGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAATTAGTAAAATTGGGCATCCGAGCTTTGGATGATTTTCCATGCCTGAGTATTCCTTATAATGCACGTGATTGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGGTAAAGTTGGAATGCAACGCTGCGCTGCATCTGTCCAATGGTTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGCCAGGGAACTTTGAACTAGACTGGCTCATATTTATGGCAGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTGCTTTGGATATCTGACGATGGCCTTCCAGATTTAGGTGGGATTAATGACGAACATAGCTGTTTTGTTGATGAGGTTCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGTTAAAGATACACCACCTGGCTGTAAATGCTCTACTCAAATACAGCCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCATGAACATGATTCTGGAGCATTTTCGATGAATGATCAGAATGGTTTTGACGAGTCTACCTCTTGTGCACATGCCTTTCGAGTTCTTAAGCAGTTGATCCAGCGGTGCCTAACAGACACAGTGACATCAGGAAATGTTTATGCTGATTCAATTTTGCAGCATTTATATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCCGCTCTCCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCGTTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACAGGGAAATATGATCTGTCAAGAGCCAAAGCTTACTGCGACAGTTTGTTACGAACTATCCAATCTAGAGATCTATTTGAATGGATTGAGCTTGAACCCCTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGTATACCAGCAAAATCTGATGAAGCCATGAATGATAAATCCCAAGTAGACATTATATCTAGCTGGAATATTGCTGAATACTTGCCAAAAAAAGTCCAAGACCATTTTGTTTACATCGTTTCCCAATTCATGTATATTCCCTGGAATTATGCACAAAACCAAGCACAAATCAGGGCCTCATTGCAGGATGGTGACACCTGTACTCCATCAATAAGCATTGGAACTGCAGTGGCTTTTGAATCAGAAATAACAGAATATATCAAAGGACAGATTAGCTCTTACTTCGCCGACAAACTTCTAGGAATTGTTCACCATATTGGTCTTCATATGAAGGGAGTGAGCAGATCAGAAAACAACCAGAGTATTTCACAAAGAGGGGATGCTGCGTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAAGAATTTGCTCAAATATGTCGATGTCAAAGAGTTTGCTCCAGAAGCCGAGTTTCATGATCCTTGTCATTCCTTCGTCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGAACTTGTGCCCGGATTCCGTTTCATTAACTGAGGAGTGGCATTGTGCAGTGCCACAGTGTGGCCAGCCTTATGATCGTGAGGTGATGGAAAATGCTCTTCTTCAGATTGTAAGACAAAGAGAACGACTATACCACCTGCAAGATCTGGTGTGTATCAGGTGCCATCAGGTGAAAGCTGCACATTTGGCAGAGCAATGTGCATGTGCAGGCTCGTTTAGGTGCAAGGAAGATGCAAATGAATTTCGTGAAAAGATGCAGCTTTTTTTTCACATAGCATCTCGTCAGAAATTCCAGCTTCTCCAAGAATGTACCTCCTGGATTTTAGAACATAGTTTAAATTGA 6651 0.4004 MGSDGRRRDRRDTRASKKRKLNRSPEDELEAKLGFDLFSEGEKRLGWLLTLASSSVEDENSYKVYSCVDLYFVTQDGSSFKSKFRFRPYFYVATKDKMEMDVEAYLRRRYEGQIADIEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKKDLMPSVERNKAKSDTTEAFVSMSTERREHKPQDFLDCLTDLREYDVPYHVRFAIDSDIRCGQWYDVGVSNNGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMIDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQDVKPGIYVTYNGDFFDWPFLERRATHLGFNMSDELGFKCDANQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYQQLINNLDRDLQYAITVEGKMDLESVSNYNEVKNAIMEKLVQLRDAPMREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSENNKSLSRYSEKSSSKSFLDLPKTEQQSRLKDRLKKYCQKAYKRVLDKPVTEVREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTEDSKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPMRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETDAEVMKFYIRKWCKVSLEVAIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVSNPVPRVVHPDWLHKKVREKEDRFRQRKLVDVFKSMNRNEQSKKHNDSNCVPLVMDDEILNELEDFGNKSRSSMHGPRPIIRHYEANNEQNSRKLSDQQDMEQEHSKDNSSKKNVLSPLQQNETCENVEKTVDYQGWLQVKKRMWKNILERRKKQRLEKSKTSNRVNGVSEQMSGKRNPGRSHVSSYLKRLEVDLTKCHWQIIQLVPSSLIGQFFAWVVVDGSMHKIPVSVPRVFYLNSRSPINEEFIGKHVNKTLPHGRHSYNLYEVSINEIQYGEVSKKLATLLADPDVEGIYETKMPLEFNAIVQLGCVCKVDKTANKRSLQEPWSLSELHMKTTTECVYLEQSLSFFYLYHSISEGRAIYVGYFPASKAISVVVVNPYQNKDLSPNFLERQFHDACQTLSIEPPLRNDINFKVDYVTHVKDAETVMQRAINGHSHGRENHVPMVAVIECPNVQLVKLGIRALDDFPCLSIPYNARDCQYQILGWQQTAGKVGMQRCAASVQWLNQRIALSRYAHVPPGNFELDWLIFMADIFFSRALHDNQQVLWISDDGLPDLGGINDEHSCFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYSLVNEMEGGTLLGFGHEHDSGAFSMNDQNGFDESTSCAHAFRVLKQLIQRCLTDTVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDKSQVDIISSWNIAEYLPKKVQDHFVYIVSQFMYIPWNYAQNQAQIRASLQDGDTCTPSISIGTAVAFESEITEYIKGQISSYFADKLLGIVHHIGLHMKGVSRSENNQSISQRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVDVKEFAPEAEFHDPCHSFVLSNVICSYCNDCRDLNLCPDSVSLTEEWHCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCHQVKAAHLAEQCACAGSFRCKEDANEFREKMQLFFHIASRQKFQLLQECTSWILEHSLN 2216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01008 2216 Gene3D DNA Polymerase, chain B, domain 1 49 228 - -
Phco9g01008 2216 SMART polmehr3 239 852 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phco9g01008 2216 Pfam DNA polymerase family B 763 1081 IPR006134 GO:0000166|GO:0003677
Phco9g01008 2216 MobiDBLite consensus disorder prediction 1 27 - -
Phco9g01008 2216 MobiDBLite consensus disorder prediction 1218 1255 - -
Phco9g01008 2216 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2213 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Phco9g01008 2216 MobiDBLite consensus disorder prediction 1284 1315 - -
Phco9g01008 2216 Gene3D Palm domain of DNA polymerase 763 947 IPR023211 -
Phco9g01008 2216 Gene3D - 238 468 IPR036397 GO:0003676
Phco9g01008 2216 Gene3D - 951 1135 IPR042087 -
Phco9g01008 2216 SUPERFAMILY Ribonuclease H-like 65 490 IPR012337 -
Phco9g01008 2216 MobiDBLite consensus disorder prediction 1295 1314 - -
Phco9g01008 2216 MobiDBLite consensus disorder prediction 1220 1244 - -
Phco9g01008 2216 FunFam DNA polymerase epsilon catalytic subunit 733 808 - -
Phco9g01008 2216 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Phco9g01008 2216 CDD POLBc_epsilon 503 1132 - -
Phco9g01008 2216 CDD DNA_polB_epsilon_exo 240 443 - -
Phco9g01008 2216 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Phco9g01008 2216 Pfam Domain of unknown function (DUF1744) 1542 1910 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Phco9g01008 2216 SUPERFAMILY DNA/RNA polymerases 469 1147 IPR043502 -
Phco9g01008 2216 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Phco9g01008 2216 FunFam DNA polymerase epsilon catalytic subunit 762 947 - -
Phco9g01008 2216 SMART DUF1744_2 1524 1910 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Phco9g01008 2216 FunFam DNA polymerase epsilon catalytic subunit 951 1135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01008 Phco-Chr9 8476462 8498358 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01008 9 8476462 8498358 Phco9g01008 9 8476462 8498358 ECH