Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00947 ATGGAAACCACCCCAGAGGTTGTTTCATCTAATTGTCTTCTTGTATCAGAGTACTCTGAATCTAACCCCACACAACTTTCTGCTATGGAACTTGGTGCACGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGTTGTGATGAGGTTTTTTTACTGTAGGCATTGCCATAATGAAGCTAAGAAGTCTGAGGAGGTTGATGTTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTGTATGCTCTTTATGTGACACAGAGCAAGATGTTCAACAGCACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTGATATATGCAAATTCTTTGATGATGATACTTCAAAGAACCAATACCACTGTGATGAATGTGGCATTTGCAGAACTGGGGGCAAGGATAACTTTTTCCACTGCAAGAGATGTGGATGTTGCTACTCCAAGGTAATGGAAAAGGGGCATCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTATCTATTTGATACAGTAAGAGAAATCAGTGTCTTGCCTTGCGCGCATACTATACATTTAGACTGTGTCAAAGAGATGGAAAAACATCATAGTGTTATTAATTCCTCATTATTTGAAAACGGATATAGGTACTCATGTCCTGTGTGCTCAAAATCCATCTGTGACATGTCAAGTTTGTGGAAGAAGCTTGACAAAGTGGTGTGGATACTTTGCAATGATTGTGGAGTGAAATCTCATGTACAATTCCATATTGTGGCCCATAAGTGCTTAAGTTGCAATTCATACAACACAAGACAGATACAGGGAGCATCTGCTACACCAAGCTCGTCTAGAGTGACCGAAATGGATGACAACATGTGTCCTCTTACTGGTCCTGGAGGATCATTGGATGAGCTATTGGAGAAGAAGGGACCTTTGTATCAAGATGTGGACTCTGAGAAGATAACTGCCAGTAGATGA 981 0.4149 METTPEVVSSNCLLVSEYSESNPTQLSAMELGARITEGDARSERRVVMRFFYCRHCHNEAKKSEEVDVVDRHDVPRHEIKKVVCSLCDTEQDVQQHCINCGVCMGKYFCDICKFFDDDTSKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMEKHHSVINSSLFENGYRYSCPVCSKSICDMSSLWKKLDKVVWILCNDCGVKSHVQFHIVAHKCLSCNSYNTRQIQGASATPSSSRVTEMDDNMCPLTGPGGSLDELLEKKGPLYQDVDSEKITASR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00947 326 ProSiteProfiles Zinc finger RING-type profile. 169 224 IPR001841 -
Phco9g00947 326 SUPERFAMILY RING/U-box 168 230 - -
Phco9g00947 326 ProSiteProfiles Zinc finger CHY-type profile. 19 102 IPR008913 GO:0008270
Phco9g00947 326 FunFam RING finger and CHY zinc finger domain-containing protein 1 238 283 - -
Phco9g00947 326 Gene3D - 238 280 - -
Phco9g00947 326 Pfam CHY zinc finger 48 114 IPR008913 GO:0008270
Phco9g00947 326 SMART ring_2 169 223 IPR001841 -
Phco9g00947 326 Pfam Zinc-ribbon 238 272 IPR039512 -
Phco9g00947 326 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 49 278 - -
Phco9g00947 326 SUPERFAMILY Zinc hairpin stack 105 162 IPR037275 -
Phco9g00947 326 SUPERFAMILY CHY zinc finger-like 49 104 IPR037274 GO:0008270
Phco9g00947 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 226 IPR013083 -
Phco9g00947 326 ProSiteProfiles Zinc finger CTCHY-type profile. 104 168 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00947 Phco-Chr9 7704150 7707939 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00947 9 7704150 7707939 Phco9g00947 9 7704150 7707939 ECH