Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00945 ATGAGAGAGCATCCGAAGGGTGATATTCTTCCCGCCATTTATATCGTCTCTGGCGCTTCTCTAACAAAGTCACTCACGCTCTGTTTGGACATTCAAATTAGTTACATGGTTCATTCATTCAAGCTCGCATTGTGTTTTCGATCCTCTTTTCCTATTTCCTTCTATCTCTCCCAAACTGCTAGGGTTTCCTCTCTCTTCTCTTTCCCTCTGTCTCTCTCCTCCGTCTCTCTCCGTGCCATGTCCAAGCCACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCCCGCGCCGCCGCCAAGAAGAATTCCCAGTCCAAACCCCAAACACCCAAACTTCCATCATCCCCCAAGAAAAGAAAATCCCCACACTCCACTTCCTCACAAAACCCTAGCAACAACAACAACAAATATCCCAAACTGCCTTCTCCGCCCATAACCGTTGAACCGGAGCAAGCTGTTGAACCGGAGCAAGCTATTAAATCGGAGAAAGCTGTTAAACCGGAGCAAGCTGTTAAACCAGAAGAAGCTGTTAAACCAGAAGAAGCTGCTAAGCCGGAACAGCGGAAGGTCTGCCAACTGTCATCGTCTAATTCTTCGAACGGGAAGACCGTGGAGCTGAAGGAGCAAGTTCCGCAGCTGAAGCAGAAACCATCGAGTTTCGATCCCACTTCGGTGACTGCATGGGAGAAGGGACAGCCAGTGCCGTTTCTCTTCCTCGCCTTGGCATTTGATATGATCTCTCAGGAAAGTGGAAGAATTGTTATCACTGACATTGTTTGCAATATGCTGCGGACTGTGATGCTTCTCTCGCCTGAGGATCTTGTTCCCATAGTTTACCTCTCCGCGAACCGGATTGCGCCTGCTCATGAAGGGTTGGAGTTAGGAATAGGCGAGTCGATCATTTCCAAGGCGCTCGCGGAGGCCTATGGAAGGAAAGAATCGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAGGAGAGCCGTTCGTCTCAACCTATGATGTGGAAGCCTGAAGCATTGACCATTAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAACCATATCAAGGCACTTCTTGTTGCTGCAACTGAGTGTGAACCTCAATATCTAATTCGATTGCTTCAGGCGAAGTTGCGAATTGGTTATGCAGAGCAAACTCTATTGGCTGCACTAGGCCAAGCTGCAGCATACACTGAAGAACACTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGATAAGGCTTCGAATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGATGCTTCCAAAGAATTGTAAATTTACTCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAGCAAAAAGTGTAACTGAAATTCTAAACAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTATCTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTCCCTGATGTTGCTGCTGCAGTTTCAAGGTTAAAGAAAACAGGTGTATCTTCATTTATTCTTGATTGTGAAATTGTTGCATATGACCGCACAACACGGAAGCTTCTTTCTTTCCAGACTCTTACTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTTTGCGTATTTGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTCAGAGTCCGTAGAGAGCATCTTTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAAAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTAATCATTAAAACATTAAATGAGGATGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCTGTAGATTTGGTACCTATTGCTGCTTTCCACGGACGTGGAAAACGTACAGGAGTTTATGGTGCCTTCCTCTTGGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGATTCGCAGAATCTGATCTTGTAGAACGTTCTTCCAGTCTTCGTTCTAATGTGATTTCCAAGCCAAAGTCATACTATAGATTTGGAGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAAGTGAGAGCGGCAGACCTGACCATTAGCCCTGTCCACCGTGCTGCAGCGGGCATAGTTGATCCGAACAAGGGCATATCTCTTCGATTTCCACGACTAGTTCGACTCCGGCATGACAAAGCTCCTGAACAGGCCACATCAGCTGAGCAGATTGCTGAGTTGTATAAAGCTCAAAAACACAATCAAGCGAACAAACAAGATGACGAAGATGAAGAAGATTATTGA 2553 0.443 MREHPKGDILPAIYIVSGASLTKSLTLCLDIQISYMVHSFKLALCFRSSFPISFYLSQTARVSSLFSFPLSLSSVSLRAMSKPPSAFDALMSGARAAAKKNSQSKPQTPKLPSSPKKRKSPHSTSSQNPSNNNNKYPKLPSPPITVEPEQAVEPEQAIKSEKAVKPEQAVKPEEAVKPEEAAKPEQRKVCQLSSSNSSNGKTVELKEQVPQLKQKPSSFDPTSVTAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNMLRTVMLLSPEDLVPIVYLSANRIAPAHEGLELGIGESIISKALAEAYGRKESWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATECEPQYLIRLLQAKLRIGYAEQTLLAALGQAAAYTEEHSKPPPEIQSPLDKASNIVKQVYSVLPDYDKIISALLTEGLWMLPKNCKFTPGVPIRPMLSKAAKSVTEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKTGVSSFILDCEIVAYDRTTRKLLSFQTLTTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFAESDLVERSSSLRSNVISKPKSYYRFGETINPDVWFEASEVWEVRAADLTISPVHRAAAGIVDPNKGISLRFPRLVRLRHDKAPEQATSAEQIAELYKAQKHNQANKQDDEDEEDY 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00945 850 Gene3D DNA ligase/mRNA capping enzyme 505 630 - -
Phco9g00945 850 Gene3D - 210 478 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phco9g00945 850 SUPERFAMILY Nucleic acid-binding proteins 688 834 IPR012340 -
Phco9g00945 850 MobiDBLite consensus disorder prediction 94 202 - -
Phco9g00945 850 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 500 508 IPR016059 GO:0003909
Phco9g00945 850 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 216 467 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phco9g00945 850 CDD Adenylation_DNA_ligase_I_Euk 465 683 - -
Phco9g00945 850 NCBIfam ATP-dependent DNA ligase 292 832 IPR000977 GO:0003910|GO:0005524|GO:0071897
Phco9g00945 850 MobiDBLite consensus disorder prediction 97 139 - -
Phco9g00945 850 FunFam DNA ligase 685 844 - -
Phco9g00945 850 ProSitePatterns ATP-dependent DNA ligase signature 2. 654 680 IPR016059 GO:0003909
Phco9g00945 850 MobiDBLite consensus disorder prediction 831 850 - -
Phco9g00945 850 FunFam DNA ligase 211 478 - -
Phco9g00945 850 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 116 848 - -
Phco9g00945 850 Pfam DNA ligase N terminus 234 409 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phco9g00945 850 Pfam ATP dependent DNA ligase C terminal region 705 816 IPR012309 GO:0003910|GO:0006281|GO:0006310
Phco9g00945 850 CDD OBF_DNA_ligase_I 688 833 - -
Phco9g00945 850 Gene3D - 486 684 - -
Phco9g00945 850 MobiDBLite consensus disorder prediction 188 202 - -
Phco9g00945 850 FunFam DNA ligase 476 682 - -
Phco9g00945 850 ProSiteProfiles ATP-dependent DNA ligase family profile. 582 718 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phco9g00945 850 MobiDBLite consensus disorder prediction 154 186 - -
Phco9g00945 850 Gene3D - 685 848 IPR012340 -
Phco9g00945 850 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 468 686 - -
Phco9g00945 850 Pfam ATP dependent DNA ligase domain 476 680 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00945 Phco-Chr9 7680718 7690594 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00945 9 7680718 7690594 Phco9g00945 9 7680718 7690594 ECH