Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00911 ATGACATTGCCCTCATGGATTTTACATTTCTCTCTCACTCTCTTTCCCCGCTCTGTTGTGAGTTACCGCTCCCTTATCCATTTCCTTTCTCTCCACACCATGGCTTCTGCAAACGCTCTCTCGTCAGCTTCCATTCTACGCTCTCCTAACCGCCAGTCTCTTACCCGAAGAATGAACCACAACGGAAGAGTGAATTACCGGCAACCGAATAGCCGTTTCGCGGTGAAGGCCTCCGCGAAGGAGATTGCGTTCGACCAGAGTTCCCGGGCCGCGATTCAGGCCGGCATTGACAAGCTCACCGACGCCGTTGGGCTGACTCTTGGGCCGAGAGGGAGGAATGTTGTGTTGGATGAGTTTGGAAGTCCAAAAGTGGTTAACGATGGTGTGACAATTGCTCGCGCTATTGAGCTTCCCGATGCCATGGAGAATGCCGGTGCAGCTCTTATTAGAGAGGTTGCCAGTAAGACTAATGACTCTGCCGGTGATGGGACAACCACTGCTTCCGTTCTTGCTCGCGAAATTATTAAGCTGGGCCTTCTCAGTGTGACTTCTGGGGCAAATCCTGTGTCTCTTAAAAGAGGAATTGATAAAACTGTGCTGGGATTGGTGGAGGAGTTGGAGAAGAGAGCAAGGCCTGTCAAAGGTGGAGATGATATCAAAGCTGTTGCATCTATATCTGCTGGGAATGATGAGTTGATTGGGCAAATGATTGCGGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATCGAGTCTTCGTCTTCATTTGAGACGACGGTTGAAGTGGAAGAAGGAATGGAGATTGACAGAGGGTATATTTCACCTCAATTTGTTACAAACCCTGAAAAGTTGACAGTTGAATTTGAGAATGCAAGAGTGTTGATTACGGATCAGAAGATTTCAGCAATAAAGGATATAATTCCATTGTTGGAGAAAACCACTCAACTGAGAGCTCCCTTGCTTATCATTGCGGAGGATGTCACTGGTGAGGCTTTGGCCACCCTTGTTGTGAATAAGCTGCGTGGTATCCTTAATGTTGCTGCCATCAAAGCTCCGGGCTTTGGTGAGCGACGAAAGGCCCTCCTTCAAGACATTGCTATATTGACTGGTGCTGAGTTCCAAGCGAGTGATCTGGGATTGCTTATTGAAAGCACTTCAGTGGAGCAGCTTGGTTTGGCTCGGAAAGTGACCATCAGCAAGGATTCTACTACTATCATTGCTGATGCGGCAACAAAGGATGAGTTGCAAGCCAGAATTTTTCAGTTAAAGAAGGAGTTGTCAGAGACGGACTCAGTGTATGATTCTGAGAAACTGGCTGAGAGGATAGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACTGAACTTGAGGATCGAAAGCTTCGAATTGAGGATGCGAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTACCTGGTGGAGGTACTGCACTGGTTCATCTCTCCACTCATGTCCCAGCAATCAAGGATAAGCTTGAGGATGCAGACGAAAGGCTAGGAGCTGACATCGTGCAAAAGGCTCTGGTAGCACCTGCTGCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTTGTTGTGGAGAAGGTAAAGAATGGTGAATGGGAGGTTGGTTACAATGCTATGGCTGACAGGTATGAGAATTTAGTAGACGCGGGAGTTATCGACCCTGCCAAGGTTACAAGGTGTGCGTTACAGAATGCTGCTTCAGTTGCTGGAATGGTGTTGACAACGCAGGCCATTGTGGTGGAAAAACAAAAGCCCAAGGCACCTGTTGCTGGTGCCCCACAAGGCCTTACTGTTTGA 1854 0.4779 MTLPSWILHFSLTLFPRSVVSYRSLIHFLSLHTMASANALSSASILRSPNRQSLTRRMNHNGRVNYRQPNSRFAVKASAKEIAFDQSSRAAIQAGIDKLTDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVLGLVEELEKRARPVKGGDDIKAVASISAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLTVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLIESTSVEQLGLARKVTISKDSTTIIADAATKDELQARIFQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTHVPAIKDKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKVKNGEWEVGYNAMADRYENLVDAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKQKPKAPVAGAPQGLTV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00911 617 Hamap Chaperonin GroEL [groEL]. 78 615 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 Gene3D GroEL 267 448 IPR027409 -
Phco9g00911 617 Gene3D - 212 485 IPR027410 -
Phco9g00911 617 FunFam 60 kDa chaperonin 267 448 - -
Phco9g00911 617 NCBIfam chaperonin GroEL 79 603 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 SUPERFAMILY GroEL equatorial domain-like 88 598 IPR027413 -
Phco9g00911 617 SUPERFAMILY GroEL apical domain-like 259 451 IPR027409 -
Phco9g00911 617 PRINTS 60kDa chaperonin signature 343 366 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 PRINTS 60kDa chaperonin signature 425 450 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 PRINTS 60kDa chaperonin signature 158 185 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 PRINTS 60kDa chaperonin signature 103 129 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 PRINTS 60kDa chaperonin signature 473 494 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 Coils Coil 414 434 - -
Phco9g00911 617 Gene3D - 82 599 IPR027413 -
Phco9g00911 617 SUPERFAMILY GroEL-intermediate domain like 212 278 IPR027410 -
Phco9g00911 617 ProSitePatterns Chaperonins cpn60 signature. 480 491 IPR018370 GO:0005524|GO:0006457
Phco9g00911 617 CDD GroEL 80 600 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 Pfam TCP-1/cpn60 chaperonin family 99 601 IPR002423 GO:0005524
Phco9g00911 617 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 70 607 IPR001844 GO:0042026|GO:0140662
Phco9g00911 617 SUPERFAMILY GroEL-intermediate domain like 438 483 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00911 Phco-Chr9 7178277 7183055 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00911 9 7178277 7183055 Phco9g00911 9 7178277 7183055 ECH