Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00888 ATGATAGAAAAGACACAGTGTGAGAAAAAAGGAAACATGGAAGGTGAAGGAACTGAGATGAAACAAGAATCCAGGTTCAAGAGGATTTGCGTGTTCTGCGGAAGTAGCCCTGGGAACAAAAGTAGCTATCAGGATGCTGCTATTGAGCTTGCGAAAGAGTTGGTATCAAGAAATATTGATCTGGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGGTTTCCCAGGCTGTTTATGACGGGGGTCGCCATGTAATTGGGGTTATTCCCAAGACACTCATGCCAAGAGAGATCACTGGAGAGACAGTGGGGGAAGTGATGGCAGTAGCAGACATGCATCAAAGAAAAGCAGAGATGGCTCGCCACTCTGATGCCTTTATTGCCTTACCCGGTGGCTATGGGACACTTGAGGAGGTTCTTGAGGTCATAACTTGGGCTCAGCTTGGCATCCATGATAAACCAGTGGGGTTGCTGAATGTAGATGGATACTACAATTCCTTGTTGTCTTTCATTGACAAAGCTGTGGAGGAAGGCTTCATTAGCCCCAAAGCTCGCCACATAATTGTATCCTCCCCATCATCGAAAGAGCTTGTGAAAAAGATGGAGGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTGAGCTGGGAAACTGAGCAGATAGAATACTCCTCAAGTTGTGAGATGTCTAGGTTAGAGGATATTGAATCATCTAAAATGGGTGGTCGAACTTCGACCTCGAGAAGTGGAGATTACTTGGAAGGGATGCTTAATGACTATGTTGGAGGAAGAAACAAACTGAAGGCTCAGAAAAGTGCCTCCACAAAGTTTGTTGCAGCACTCACTTGCCTTCAGTTTTTCTTTGCAGTTTATGCAACATTTCTATTGTATTACATGGGACCTTCCATTGATTTAAGAACCAAACCAGAGTTCACATGGGCTACCAAAATTGCCCAACAATGGAAACAGCTTATGATCACACCCCACGTTATTGGCCACTACCAAAAAGCTTCTTCCTCTCTCGTCATGGAGGATGTTCTTCCCACAACTCCATCACAAGTGTGTGAGAATGAGAAGATAGACTTCCTGCAAAAGAAGTCCAATGATGTCCAAATGATCAAGTTAAAGAGAGAGCTCTACGATGAGGTGTTGAACTTCCAAAGCAAAACTTTTGGCACCGAGACTCTCCAAGAGCTAATGGCAATGAAATCCAAGTGGAACTTGAAGGGTCCAAACAGCCCAAAAATCACAGTGTTGCTGAACCACTTCAAGAGAAAGACACTTTGTGCTCAGCTTGATTCTTTGCTCCAACAGACCCTTCCTTTCCATCATGCTTGGGTTCTTTCATTTGGGAGCCCCAATGAGGCCTCATTGAGGAGAATTGTGGACACCTATAATGACTCAAGAATCAGCTTCATAAGCTCAAGCTATGATTTCAAGTACTATGGAAGGTTCCAAATGGCTCTTCAGACAGAAGCTGATCTTGTGTATGTCATTGATGATGACATGATTCCTGGAAGGAAGATGTTGCAGATTTTGGCGCACGTGGCTGGGACAGAAAAATACAAGAATTCTGTTTTGGGGAGTATTGGAAGGATTTTGCCTTTTAGACAGAAGGATTTCACTTTTCCAAGTTACAGAAAATTTCGCTCCAAGGAGGCAGGGTTGTATTTACCCGATCCTGCTTACGATATCACAGTTGATAAAATTGTGCAGGTGGATTTTCTATCTAGTTCATGGTTTCTCTCTGCAGATCTTGTCAAGACACTATTCGTTGAGACACCTTTTACCTTCTCAACTGGTGAAGATCTGCACCTCAGTTATCAGCTTCAGAAGTACAAAAATGCTGGCTCCTTTGTTCTTCCAGTAGACCCTAAGGACAAGGAAACTTGGGGAGATAGTGAACACAGGCTTGCATATGTATCTGAAACCACTGTGATTTTCAAGGACATAGTTCAGGTCAGAGATGATCAATGGTGGAAAGCACTTTCCACTGGTTATTTGACTCAGTGGGCTGCAATGTACCCACAAAAAGTCGATGCACTCTTCTATGCTCACTCAGTTGATGAGGTGAAAGTGCTTGCACCACTTCTTGAAAAATTCAGGAGCACAGTTGGCAAGAAGGCCTACATTGTTGTCTCTGGAGGCAGTTTCTGCACTTGTGAAGATGCTGCAACAGCTCTCAAATGGCCTACAGTGGTCTGCAAAGAACGTCGGTTCAAGATTTTTGATTTGGCCATTGGATCACTTTCTGGAGTGTCAGACTCAGAGGCACCAGTGATACATGCAGTGTACACCAGCATGAAGGGTTTGATCAAAATTCACAACCCCAGTGTAGTGATCACTGTTGCTGACATAGACCCTCATGTGAGAAAAGCTCTTAAGATGGCATCAGAAACCAACTCAAATGCTACCACATTGGTTCTTTTACCCAGGGCATCAGTGTCTCAAGTTCTCTGGATCGCTGATCTGCGTTCAACAGCATTACCAAATTGGAATAGGATGAGGATTTCTGTGAGCATCATCACCCAAAATAGAGCCAAATCACTAACAAGGCTTCTTAAATCTCTAAGCAATGCCTACTATCTTGGAGATGAAATTCCAATTACTTTCAACATGGATAGCAAGGTAGATGAGGAAACTATAAGAGTAGTAGGTTCATTTGAGTGGCCTCATGGGCCAAAAACCCTGAGAAGGAGAATCATCCAAGGTGGTCTCATCCGGGCTGTGAGTGAAAGTTGGTATCCATCATCAGATGATGACTTTGGTCTCCTGCTAGAAGATGACATTGAACTTTCCCCTTACTACTACTTATGGATCAAATATGCACTCATGGCTTACCACTATGACCCTCAAGTTTCTCTCCCTGAGCTCTCCTCCATCTCCCTCTACACTCCAAAGCTTGTTGAAGTTGTCAAAGAGAGACCCAAATGGAATGGCACAGAATTCTTCAAACACATCCACCCCAACACACCTTACCTTCACCAACTACCATGCAGCTGGGGGGCAGTGTTCTTCCCCAAACATTGGAGAGAGTTCTATGTGTACATGAACATGAGGTTCACTGAGGATGCCAAATCCAACCCTGTTCAAATTCCAAAATCTAGAACAAATGGATGGCAAGCTTCATGGAAGAAGTTCCTCATAGACATGATGTACCTCAGAGGGTATGTTAGTCTGTACCCAAATTTCCCTCAACAAGCAAGCTTTTCAACCAACCATATGGAGCCAGGGGCACATATTAGTGCAAAAGACAATGTGGTTAAGCATAACAAACAGGACTTTCAGGTGCCACTATTGAAAGAAGACTTCAGAAACTTGTTGCCAGCAATGAAGATGCCTCCAGCATCAAAGCTTCCATCTCTAAACCTCTTCAATCAACCGGTTTCTCTAAAGGGTCTGAAAGCTGCTGGAGCTAAGTTGGGACAGGATGTGCTAAGATGCAACAATGCCACTGAGGTTGTGGTTGTTGATCAAGACACGGGTCTACCTCATACCTGCTCCAAATTCTGA 3516 0.4386 MIEKTQCEKKGNMEGEGTEMKQESRFKRICVFCGSSPGNKSSYQDAAIELAKELVSRNIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPKTLMPREITGETVGEVMAVADMHQRKAEMARHSDAFIALPGGYGTLEEVLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPKARHIIVSSPSSKELVKKMEEYFPQHERVASKLSWETEQIEYSSSCEMSRLEDIESSKMGGRTSTSRSGDYLEGMLNDYVGGRNKLKAQKSASTKFVAALTCLQFFFAVYATFLLYYMGPSIDLRTKPEFTWATKIAQQWKQLMITPHVIGHYQKASSSLVMEDVLPTTPSQVCENEKIDFLQKKSNDVQMIKLKRELYDEVLNFQSKTFGTETLQELMAMKSKWNLKGPNSPKITVLLNHFKRKTLCAQLDSLLQQTLPFHHAWVLSFGSPNEASLRRIVDTYNDSRISFISSSYDFKYYGRFQMALQTEADLVYVIDDDMIPGRKMLQILAHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITVDKIVQVDFLSSSWFLSADLVKTLFVETPFTFSTGEDLHLSYQLQKYKNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSTGYLTQWAAMYPQKVDALFYAHSVDEVKVLAPLLEKFRSTVGKKAYIVVSGGSFCTCEDAATALKWPTVVCKERRFKIFDLAIGSLSGVSDSEAPVIHAVYTSMKGLIKIHNPSVVITVADIDPHVRKALKMASETNSNATTLVLLPRASVSQVLWIADLRSTALPNWNRMRISVSIITQNRAKSLTRLLKSLSNAYYLGDEIPITFNMDSKVDEETIRVVGSFEWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDDFGLLLEDDIELSPYYYLWIKYALMAYHYDPQVSLPELSSISLYTPKLVEVVKERPKWNGTEFFKHIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNMRFTEDAKSNPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPQQASFSTNHMEPGAHISAKDNVVKHNKQDFQVPLLKEDFRNLLPAMKMPPASKLPSLNLFNQPVSLKGLKAAGAKLGQDVLRCNNATEVVVVDQDTGLPHTCSKF 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00888 1171 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 398 624 IPR029044 -
Phco9g00888 1171 SUPERFAMILY Nucleotide-diphospho-sugar transferases 415 615 IPR029044 -
Phco9g00888 1171 SUPERFAMILY MCP/YpsA-like 25 204 - -
Phco9g00888 1171 CDD Glyco_tranf_GTA_type 427 518 - -
Phco9g00888 1171 MobiDBLite consensus disorder prediction 1 20 - -
Phco9g00888 1171 Pfam Possible lysine decarboxylase 71 201 IPR031100 -
Phco9g00888 1171 Gene3D - 16 203 - -
Phco9g00888 1171 PANTHER OSJNBA0004B13.7 PROTEIN 519 1162 - -
Phco9g00888 1171 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 837 1086 IPR029044 -
Phco9g00888 1171 FunFam CASP-like protein 17 203 - -
Phco9g00888 1171 NCBIfam Rossman fold protein, TIGR00730 family 27 204 IPR005269 GO:0009691|GO:0016787
Phco9g00888 1171 SUPERFAMILY Nucleotide-diphospho-sugar transferases 835 1026 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00888 Phco-Chr9 6920515 6933490 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01504 10 37843660 37847017 Phco9g00888 9 6920515 6933490 PCT