Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00872 ATGCCGCCAAAGTTCGATCCATCCCAGGTCGTCGACGTCTTCGTTCGCGTCACCGGCGGCGAAGTTGGCGCCGCGAGTTCGCTCGCTCCTAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCCTCAGAGTCACCGTCAAGCTTACCGTGCAGAACCGTCAGGCTAAAGTCACGGTGGTTCCCTCTGCGGCGGCGCTAGTCATCAAGTCCCTGAAGGAGCCCGAGCGCGACCGGAAGAAGACCAAAAACATTAAGCATAATGGAAATATCTCCCTCGACGATGTCATCGAGATTGCTAGGATTATGAGGCCGAGGTCAATGGCGAAGGACCTTAGCGGATCGATTAAGGAGATTCTCGGGACATGCGTCTCTGTCGGATGCACTGTTGATGGAAAGGATCCTAAGGACTTGCAGCAGGAGATCACCGATGGTGATGTTGAGGTCCCTCTTGATTGA 501 0.5549 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKSLKEPERDRKKTKNIKHNGNISLDDVIEIARIMRPRSMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00872 166 FunFam 60S ribosomal protein L12 82 164 - -
Phco9g00872 166 FunFam 60S ribosomal protein L12 1 81 - -
Phco9g00872 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Phco9g00872 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Phco9g00872 166 Gene3D - 1 81 IPR036796 -
Phco9g00872 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Phco9g00872 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Phco9g00872 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Phco9g00872 166 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Phco9g00872 166 Gene3D - 82 164 IPR036769 -
Phco9g00872 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Phco9g00872 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Phco9g00872 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00872 Phco-Chr9 6775637 6776137 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00872 9 6775637 6776137 Phco9g00872 9 6775637 6776137 ECH
Phco6g00642 6 6394968 6395468 Phco9g00872 9 6775637 6776137 ECH