Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00819 ATGGACTTCACAGACGACTTCACCTGGTTATTCGCGCAACGCCGTGAGTTCGCCGTCGCGGAGGCCATGGATTCCGACCTCGACTTGGCCTATCGCCTACAGTTGCAGGAGGCTCTCGAGGCCTCCCTGGCCATGCATCCCTCCTCCTCGTCCGCGGAGCCTATTGTCGACGACGAAGGAGCGCTGAACGTGACGTCACTGCAGAACGAGGAGCTGGCGCGTGTGGAGTGCGAGGTGAAGGACCGGGAGCAGAGCAAGAAGGAAATGCAGAAGATAGGGGAGGATGTCAGCCGAAGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCGACGATTTCTGAGGTGGATTGGCAGCAATGGGGCGATAACTTTGAGAAACCGTTCGACGAGGGTTCGTCGTCGTCGTCGAGGACGGAGCAAAGCGTGGTTAGGGTTTACCTGAAGGGTTTGGTGAGCGAGGAAAGCGTGAGGGGAGAGAGGGTTGTGTTGTCTGGGATAGGGGTTGCGATTTGTGACCTTAGTGATAATTTGATATTCGAGGTCTCTAAGTCGGTGGTTGGGAATGGAACTAGCAAGGTGGCTGCGGAGTTTAAGGCGTTGATTGAAGCCCTCGATTTGGCTCTTGCTTTGAACTTGAAGCGCATCGTTTACTATTCCGATTATTATCCGCTTTTCCAACTTGTGAAACGAAAATGGTCTCCAAAACAGAGGAAGATTGCCATGTTGATCGATCAAGTTTATCTGCTTCAAAGGAAGTTTACATACTGCCATTCAAGGCTTTTGGCCAGACAGGATATCAAGTTTGCATTTAAGCTTGCACGAGATGCGATTGTGTCTCAGTCCACGAGACCCAGGGAACCTGGGAGTACGAAGACTTTGAATGAAACTTGTGTTATATGTTTGGAGGATACTGATGTCAGTCAGATTTTTTCAGTTGATGAATGTCAACACCGCTACTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATTGTGCCTAAGTGCCCTCATGAGGGATGCAAGTATGAGCTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGATACCATGCGGCAACGCAAATTGGAAGCTTCAATTCCTGCTGCTGAAAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGACAAAAACTGAGGTCTTTGAGTACTCGAAAAATCTTATTGGTGAATCTGAACTGTCAAAACTCAAGAAATGCTTAAAATGTCATGGCCTTTTTTGTTTTAACTGCAAGGTCCCTTGGCATAGCGGTATGACATGTGATAGTTATAAAATGTTGAATCCCAATCCTCCTGCCGAAGATTTGAAGCTGAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTTCGAATTTTGCTATAACTGTGGTGCTGAGTGGAAGGACAAAAAAGCAACATGTGTTTGCCCACTCTGGGCAGAGGACAATATTTGGATGGAGGAAAGAGACTCAGAAGATGATGATGATGATTATGATGATGATGATGATGATGATGATGATGGCTTTTTATTCTGA 1629 0.4702 MDFTDDFTWLFAQRREFAVAEAMDSDLDLAYRLQLQEALEASLAMHPSSSSAEPIVDDEGALNVTSLQNEELARVECEVKDREQSKKEMQKIGEDVSRRIHDEKVAREISTISEVDWQQWGDNFEKPFDEGSSSSSRTEQSVVRVYLKGLVSEESVRGERVVLSGIGVAICDLSDNLIFEVSKSVVGNGTSKVAAEFKALIEALDLALALNLKRIVYYSDYYPLFQLVKRKWSPKQRKIAMLIDQVYLLQRKFTYCHSRLLARQDIKFAFKLARDAIVSQSTRPREPGSTKTLNETCVICLEDTDVSQIFSVDECQHRYCFSCMKQHVEVKLLHGIVPKCPHEGCKYELLVDSCQKFLTQKLTDTMRQRKLEASIPAAEKVYCPYPRCSALMTKTEVFEYSKNLIGESELSKLKKCLKCHGLFCFNCKVPWHSGMTCDSYKMLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKDKKATCVCPLWAEDNIWMEERDSEDDDDDYDDDDDDDDDGFLF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00819 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 378 IPR013083 -
Phco9g00819 542 CDD BRcat_RBR_unk 377 440 - -
Phco9g00819 542 ProSiteProfiles TRIAD supradomain profile. 293 517 IPR044066 -
Phco9g00819 542 ProSitePatterns Zinc finger RING-type signature. 315 324 IPR017907 -
Phco9g00819 542 SUPERFAMILY RING/U-box 451 514 - -
Phco9g00819 542 ProSiteProfiles Zinc finger RING-type profile. 297 341 IPR001841 -
Phco9g00819 542 SUPERFAMILY Ribonuclease H-like 165 254 IPR012337 -
Phco9g00819 542 SUPERFAMILY RING/U-box 378 441 - -
Phco9g00819 542 Pfam IBR domain, a half RING-finger domain 456 505 IPR002867 GO:0008270
Phco9g00819 542 Pfam IBR domain, a half RING-finger domain 371 437 IPR002867 GO:0008270
Phco9g00819 542 Pfam Reverse transcriptase-like 163 276 IPR002156 GO:0003676|GO:0004523
Phco9g00819 542 CDD Rcat_RBR_unk 463 498 - -
Phco9g00819 542 SUPERFAMILY RING/U-box 295 376 - -
Phco9g00819 542 Gene3D - 145 283 IPR036397 GO:0003676
Phco9g00819 542 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 134 512 IPR031127 GO:0004842|GO:0016567
Phco9g00819 542 FunFam RBR-type E3 ubiquitin transferase 143 280 - -
Phco9g00819 542 FunFam RBR-type E3 ubiquitin transferase 292 377 - -
Phco9g00819 542 FunFam RBR-type E3 ubiquitin transferase 435 541 - -
Phco9g00819 542 MobiDBLite consensus disorder prediction 518 542 - -
Phco9g00819 542 Gene3D - 435 534 - -
Phco9g00819 542 SMART ibrneu5 450 505 IPR002867 GO:0008270
Phco9g00819 542 SMART ibrneu5 364 437 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00819 Phco-Chr9 6318700 6321913 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00819 9 6318700 6321913 Phco9g00819 9 6318700 6321913 ECH