Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00789 ATGAATAGGGGGAGAACAGAAGGCATAACCTTTACGAAGGAACCTTTCATGGAGGATGCAGGGCCTCGTAAGATAAAGAACATGAAGTTCTCCACGTTATCAGATTCGGAAATAAGCAAACTTGGTGAAGTTCAAGTGTGGAAAGGTTCCTATTATGATTCCTTTAAGAAACCTATCCATGGTGGCTTGTTGGATCCTCGCATGGGTCCTGCTAACAAGAGTCTTGGCTGTGCTACATGCCATGGGAATTTTCATGACTGTCCAGGGCACTATGGATACTTAAACCTTGCCCTTCCTGTTTTCAATGTTGGATATTTAGCTAGCATTGTGGAAATACTGAAGTGCATTTGTAAGGGCTGTGCTAGAATTCTCCTTGATGAAGATACCCGTAAAAAACATTTGAAGAAAATGAGAAGTTCCAAAAAGAGTGAGCTGGATAAGATTGATTTTGTGAAAGTTCGTATAATTAAAGATTGTAGCAAAGTTGTGAATTGCCCTAGATGCGGATATATCAACGGTTCAGTAAAGAAGCTTCCGGCTTCACTGATTATCATGCATGATTGTTCAAAATGTAAAAATAATATTGTTGAAGAGCTTGAATCCACACTTTCTCGTATAAAAGACTCTAAGACGACCACCAATGTGTCTAATCGAATTCTTAATCCTTTCCAAGTTCTTTCGTTGTTTAGAAAGATGCTTGACGAGGACTGTGAATTACTCTATGTAGCTGAAAGACCAGAGAAACTCATAATAACAAACATTGTTGTGCCACCTATAGCTATTCGACCTTCAGTTGTAATGGATGAATCACTGAGCAATGAAAATGACATAACTGAGAGGCTAAAGAACATAATCCAAGCAAATGCTGTTCTGCGCCAGGAATTACAAGAATCAAGTGTTTCATCCAAATTTCTGGATGGTTGGGAAATTCTTCAAAATGAAGTTGCTCAATTCATAAATAGTGATGTTCGTGGTATACCATTCTATATGCAATCAACCAAGCAATTGGCTGGTTTTGTTCAGCGCTTGAAAGGTAAGCATGGACGTTTCCGTGGCAATTTATCTGGAAAACGTGTTGAATATACAGGAAGAACAGTTATTTCTCCGGATCCTAATCTGAAGATTTCTGAGGTTGCAATACCCATCCTTATGGCTCGTATACTGACTTATCCTGAGCGTGTTACGCACCACAACATAGAGAAGTTGAGACAGTGTGTGAGAAATGGTCCTGATAAGTATCCTGGGGCGAGAATGCTTAGACGTGATGGAGGCCACTCATGGTCCTTAAAAGTTCTTTGTAGGAAACGTGCTGCAGATGAATTGAGGATTGGTGATATTGTTGATCGCCATTTAGAAGATGGAGACATTGTTCTTTTCAATAGACAACCAAGCTTACATCGGATGTCTATAATGAGTCACAGGGCAAGGATTATGCCTTGGAGAACTTTAAGATTCAATGAATCTGTCTGTAACCCTTATAATGCTGACTTTGATGGTGATGAGATGAACTTACATGTCCCACAAACTGAGGAGGCTCGGACAGAGGCTATTTTGTTGATGGGGGTGCAAAACAATTTATGCACACCAAAAAATGGCGAGATTCTGGTTGCTTCTACGCAAGACTTTTTAACCTCTTCTTTTCTCGTAACCAGAAAAGATACTTTTTATGACCGTTCTGCTTTTACAAATATTTGCACTTTCATAGGTGATGGCTTGGATCTTATTGATTTGCCAACTCCTGCAATTGTTAAGCCTGTTGAGCTTTGGAGTGGTAAGCAGTTATTTAGCCTTCTACTGCGCCCACATGCAAATTTTAAAGTCTATGTGAATCTTACTGTTAAGGAGAAAACATACACAAAGCTTGATGACAAGAAAAGAGAATTGAAAACATTGTGCCCAAATGATGGGTTTGTTTATTTTCGTAATACTGAGTTGATCTCCGGCCAAATTGGAAAGGTTACTCTAGGAAATGGCAATAAGGATGGACTGTTCTCTGTGCTACTACGAGACTATAAAGCACATGCAGCTGCGTCTTGCATGAATCGTTTAGCTAAATTGAGTGCGCGGTGGATTGGTAATCATGGGTTCTCCATAGGCATTGATGATGTCCAACCAAAAGAGATACTGATTAAGAAGAAAGATGAAACACTTTCAGAAGGTTATAAGAAATGTGATAATCACATACAAGCTTTCAATAAAGGAAAACTAGAACTCTTAGCTGGTTGTGATGCTGCTCAAACATTAGAGACTCAGATTACTGGGGTATTAAATGGACTGCGTGATATGGCAGGGAAGGTTTGCATGCAGACCCTGCACTGGAGAAATAGTCCATTGATCATGTCGCAGTGTGGATCCAAAGGATCTCCTATTAATATCAGTCAAATGGTTGCTTGTGTGGGTCAACAGTCTGTTGGTGGTCGTCGTGCACCTAATGGGTTCCTAGATCGGAGCCTTCCTCATTTCCCTCTAAATGCAAAGACCCCTGCTGCTAAAGGTTTTGTTGCTAATTCATTTTACAGTGGATTGTCAGCCACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATATATGTCTCGTCAATTAATGAAATCCATGGAGGATTTGTTTTTACATTATGATTACACTGTGAGAAACGCAGGTGGTTCTATTGTTCAATTTTGCTATGGAGATGATGGCATGGATCCAGGAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGAGCGGTTGTTTCTTAAAAGCAAGGCCATATGTCCCAATAAGGACGATGATGAAGTTTTATCTTCCTCAGATGTGTGCAAAGTAGTTCTAGAGAAGCTGTCAGAATTTGGTGTGTCTAGGGAAGTTGAAAAGGGGGTTTTAGAGGTGGGCTTCTCTGCAGATTTTGTACAGTCTCTACAGTCCTTTATTAAGGATAATACAACATTAACAGAAGAAACTTTCACTGATGACAATTCCCAAATCCTCAAAAAATTTGGGCAGAGGATATCTGGGATCACTCGTGCACAACTAGAGGTTTTTTTGAATATTTGTCTATCTCGTTATCATTCAAAAAAAATGGAGGCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAACGTCACTCTCGGAGTTCCACGTGTCAAAGAAATTATGAATGGAAACAAAAAGATCAGTACACCAATTATCACGGCAATACTTGAGAGAACTGACTGTGCAAATACTGCAAGAATAGTTAAAGGTCGAATAGAAAAAACAAATTTAGGCCAGGTTGCAAAGAGTATAAAAGTTGTTGTGACTTCAAGATTAGCGTCAGTTGTTATCACCCTTGACATGGAAAGAATCCAGGATGCACATCTAAATATAGATGCTAATATTGTTAAAGAATCAATTTTACAAACTAAAAAGACGAAACTGAAGCCAGAGCACATCAAGATTTTAGATGTGAAAAAGCTTCGAGTTGTTCCCCAAGATGCTGATAGAAGTAAATTGCATTTTCAACTTAATTATCTCAAAAATTTGCTTCCGACGGTTGTAGTAAAGGGAATTAAAACTGCTGATCGAGTTGTTATCAGTAAAGAAGAAGATAAAATCACCAAGGCTGAAAAGTTCAAATTACTGGTTGAAGGCACGGGCTATCGAGAGGTCATGGGAGTTGAAGGGGTTGATGGATGCAAAACTGTTAGTAATCATATTCATGAAGTGCGGGACACGCTGGGAATTGAAGCTGCCAGAGAGTGTATTGTTAAGGAGATAAAGTACGTAATGGTGGACACACATGGAATGAATATAGACACGCGACATATGATGCTTCTAGCAGATGTTATGACTGCCACTGGTCATATCCTCGGAATAAATAGATTTGGAATTTCAAAGATGGGCAAAAGTGTATTAATGCTTGCATCATTTGAGAGGACGGCAGATATTCTTTTCCAGGCATCTGTACGTGGAAGGGATGACTCGATTGGTGGAGTAAGTGAATCCATAATCATGGGTATACCAATTACAATAGGTACTGGAATGATCAAGGTCAAACAAAGGTTGGAACTTCCGGATTTGCCTCATGGAGCCAGTCCTATTCTGTCTTGA 4179 0.3982 MNRGRTEGITFTKEPFMEDAGPRKIKNMKFSTLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLASIVEILKCICKGCARILLDEDTRKKHLKKMRSSKKSELDKIDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDCSKCKNNIVEELESTLSRIKDSKTTTNVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEKLIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGWEILQNEVAQFINSDVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAIPILMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKKCDNHIQAFNKGKLELLAGCDAAQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFCYGDDGMDPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVLEKLSEFGVSREVEKGVLEVGFSADFVQSLQSFIKDNTTLTEETFTDDNSQILKKFGQRISGITRAQLEVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMNGNKKISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVVVTSRLASVVITLDMERIQDAHLNIDANIVKESILQTKKTKLKPEHIKILDVKKLRVVPQDADRSKLHFQLNYLKNLLPTVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGTGYREVMGVEGVDGCKTVSNHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIGTGMIKVKQRLELPDLPHGASPILS 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00789 1392 SMART rpolaneu7 247 550 IPR006592 GO:0003677|GO:0003899|GO:0006351
Phco9g00789 1392 FunFam DNA-directed RNA polymerase subunit 1325 1381 - -
Phco9g00789 1392 Gene3D - 880 931 - -
Phco9g00789 1392 Gene3D RNA polymerase ii 389 449 - -
Phco9g00789 1392 Pfam RNA polymerase Rpb1, domain 4 730 834 IPR007083 GO:0003677|GO:0003899|GO:0006351
Phco9g00789 1392 Pfam RNA polymerase Rpb1, domain 2 356 522 IPR000722 GO:0003677|GO:0003899|GO:0006351
Phco9g00789 1392 Pfam RNA polymerase Rpb1, domain 5 841 1326 IPR007081 GO:0003677|GO:0003899|GO:0006351
Phco9g00789 1392 Gene3D - 703 820 IPR038120 -
Phco9g00789 1392 FunFam DNA-directed RNA polymerase subunit 389 449 - -
Phco9g00789 1392 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1377 - -
Phco9g00789 1392 FunFam DNA-directed RNA polymerase subunit 530 702 - -
Phco9g00789 1392 Gene3D RNA polymerase Rpb1, domain 3 530 702 IPR042102 -
Phco9g00789 1392 Gene3D - 821 879 - -
Phco9g00789 1392 FunFam DNA-directed RNA polymerase subunit 16 138 - -
Phco9g00789 1392 Gene3D RNA polymerase II, clamp domain 15 140 IPR044893 -
Phco9g00789 1392 FunFam DNA-directed RNA polymerase II subunit RPB1 434 529 - -
Phco9g00789 1392 PANTHER DNA-DIRECTED RNA POLYMERASE 29 1376 IPR045867 GO:0003899|GO:0006351
Phco9g00789 1392 CDD RNAP_III_Rpc1_C 1029 1372 IPR035698 -
Phco9g00789 1392 Gene3D - 348 529 - -
Phco9g00789 1392 FunFam DNA-directed RNA polymerase subunit 703 820 - -
Phco9g00789 1392 CDD RNAP_III_RPC1_N 33 891 IPR035697 -
Phco9g00789 1392 Pfam RNA polymerase Rpb1, domain 1 23 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Phco9g00789 1392 Gene3D - 1327 1372 - -
Phco9g00789 1392 Pfam RNA polymerase Rpb1, domain 3 525 703 IPR007066 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00789 Phco-Chr9 5952788 5976783 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00789 9 5952788 5976783 Phco9g00789 9 5952788 5976783 ECH