Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00731 ATGGAGGGCGAGAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGGTAGCGAGCATCTCGGAGTATAGGCCTCCGGTGAAGAAGGAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGCTGATCCCGATGTTCGAGGAAATTAGGGACATGAAAGATCCGATCCCCAAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAAGCTCTTGAATCCGCCAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGGTATTATGAATAAATTCTACGAGGTGACAGGTCGGTTGGAACAATCATTGGGTGGTATTTCCTATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTATGAGGATATGTTGTCTCTCTACGACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCGATTAGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCACTTGCTTTGCATGAGATGGTATCAAGCGGTGGAGATCCTGGGGCACGAATAGAAAAAATAGCGATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATATAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAAGTCTATGGAGTCGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCAATTTCCCTGGAATTAATGAAGGATCCTGTCATTGTTTCAACTGGACAGACTTATGAGCGTTCTTGTATTGAGAAATGGTTGCAAGCAGGGCATGGGACATGCCCCAAAACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCTTACGAAGTCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCTGCTGAGCGAAGTAAGATTGACGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTCTTGTCTGTGCCTGACTCCCGCACTCAAGAACATGCTGTAACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATCGTCTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCACGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATTGATGAAAACAAGGTTACTATTGGATCTTCAGGAGCCATACCACCACTAGTGATACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCTCTCTTCAATTTGTGCATTTACCAGGGTAACAAGGGGAAGGCAGTGCGGGCTGGCGTTATCCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCCTTAGCTATTTTGGCAATACTGGCTAGCCATCCTGAAGGGAAGGCTACTATTAGAGCTGCAGAGGCAGTGCCAGTTTTAGTAGAGTTTATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTAGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTACTAGAGCGCATGAGCAGGTTACTTGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCTGAACGAGGAAACCCAACTTCCTTTGATTACTAACCCAGATGATTCGTAA 1980 0.4636 MEGENASKVIELVNEVASISEYRPPVKKEYCNLARRLKLLIPMFEEIRDMKDPIPKDTSKAVLAFKEALESARELLRFGSEGSKLYLVLERDGIMNKFYEVTGRLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSLYDNSSDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVSSGGDPGARIEKIAMLLKKIKDYVQTENIVKDDNLGGKGIFAKVYGVGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVILLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKATIRAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAAQLLERMSRLLEQQQEVPTQTETQALNEETQLPLITNPDDS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00731 659 CDD RING-Ubox_PUB 255 307 IPR045210 -
Phco9g00731 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 327 IPR013083 -
Phco9g00731 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Phco9g00731 659 SUPERFAMILY RING/U-box 244 330 - -
Phco9g00731 659 FunFam RING-type E3 ubiquitin transferase 337 488 - -
Phco9g00731 659 FunFam RING-type E3 ubiquitin transferase 528 646 - -
Phco9g00731 659 Gene3D - 490 638 IPR011989 -
Phco9g00731 659 Gene3D - 338 489 IPR011989 -
Phco9g00731 659 PANTHER U BOX DOMAIN-CONTAINING 25 627 - -
Phco9g00731 659 Gene3D - 4 114 IPR036537 GO:0007166
Phco9g00731 659 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842|GO:0016567
Phco9g00731 659 MobiDBLite consensus disorder prediction 632 659 - -
Phco9g00731 659 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515
Phco9g00731 659 Pfam Armadillo/beta-catenin-like repeat 381 420 IPR000225 GO:0005515
Phco9g00731 659 Pfam U-box domain 254 324 IPR003613 GO:0004842|GO:0016567
Phco9g00731 659 Pfam Neurochondrin 516 635 IPR008709 -
Phco9g00731 659 SMART arm_5 422 462 IPR000225 GO:0005515
Phco9g00731 659 SMART arm_5 587 627 IPR000225 GO:0005515
Phco9g00731 659 SMART arm_5 463 503 IPR000225 GO:0005515
Phco9g00731 659 SMART arm_5 545 585 IPR000225 GO:0005515
Phco9g00731 659 SMART arm_5 504 544 IPR000225 GO:0005515
Phco9g00731 659 SMART arm_5 381 421 IPR000225 GO:0005515
Phco9g00731 659 SMART Ubox_2 257 320 IPR003613 GO:0004842|GO:0016567
Phco9g00731 659 MobiDBLite consensus disorder prediction 327 347 - -
Phco9g00731 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515
Phco9g00731 659 CDD MLKL_NTD 7 135 - -
Phco9g00731 659 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Phco9g00731 659 MobiDBLite consensus disorder prediction 329 345 - -
Phco9g00731 659 SUPERFAMILY ARM repeat 352 627 IPR016024 -
Phco9g00731 659 FunFam RING-type E3 ubiquitin transferase 254 327 - -
Phco9g00731 659 Coils Coil 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00731 Phco-Chr9 5411798 5416092 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00731 9 5411798 5416092 Phco9g00731 9 5411798 5416092 ECH