Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00671 ATGTTGAGGGTGGCCGTGCGATGGAATTGGAGGCCAATGTCTTCTCTGCCTCTAACTGCCTTCACATCACAACATTTCCACACGCTGAACCCTAGGCCTCCATGTCGCACCTTCAGGCTTTTTTGCCGACCTTCTTCTTCCGCCGTTGCGCACACCTCGCTTCCTCTCTCCGCCGACTTGCACCGCTACCTCCGCTGCTCCTTGCCGCAGAATTCGCCGCTCCGAGTCGCGGTTCTCGTTAGCGGAGGTGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCCGGCCATTCCTGCACCGCTTTCTATCTCAAGATATGGTTCCAAGAAGATTTTGAGAACTTTTGGTCAGAGTGCCCCTGGGAAGAGGATTTAAAGTATGCCAAAGCTGTTTGTGAACAGGTTGAAGTACCGTTAGAAGTTGTTCATTTAACTGATGAATACTGGAACAATGTGGTTTCTTATCTCATTGAAGAGTATAGTAGTGGCCGAACTCCTAACCCCGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCTATTGGTGGCATGGGCTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATGGCATGAATGGGCCTTCTGTTCTTGAACTATCACAAGATATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTAAAGCAACTTCTTTTTCCACTTGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCAACAGAATTTGATTTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGAGAAAGAGAAGGCATCATACTGGAGGCTGAGACAGGGGATTTCCTTGGCAAACATCGAGGATTCTGGTTTTATACTATTGGTCAGCGTCAGGGTCTACGGCTACCTGGAGGTCCATGGTATGTTGTCGAGAAGGATGTTAAAAACAATGTAGTTTTTGTCTCAAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGTGAGCTGCCCCCAGGCCAGACAAGTCAACTTCAATGCAAGGTGAGACATGGTCCAGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGCCAAGGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCTGCTGGGCAGTTTGCGGCCTTTTACGAGGGAAGAACGTGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAATGCTTGGGAATCCAGTAAAAATAAAAGTTAAACCTGATAGCCCGCAAGAAGTATGTGATTCTGCAGAGTTAGCAAGTAAAGCATGA 1467 0.4574 MLRVAVRWNWRPMSSLPLTAFTSQHFHTLNPRPPCRTFRLFCRPSSSAVAHTSLPLSADLHRYLRCSLPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCEQVEVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADGMNGPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRRLATEFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSELPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGQGHSAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSMLGNPVKIKVKPDSPQEVCDSAELASKA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00671 488 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 74 436 IPR004506 GO:0008033|GO:0016740
Phco9g00671 488 FunFam tRNA-specific 2-thiouridylase MnmA 288 347 - -
Phco9g00671 488 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 75 435 IPR004506 GO:0008033|GO:0016740
Phco9g00671 488 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 75 320 - -
Phco9g00671 488 Gene3D - 288 347 IPR023382 GO:0016783
Phco9g00671 488 PANTHER - 60 478 - -
Phco9g00671 488 Gene3D HUPs 61 287 IPR014729 -
Phco9g00671 488 Pfam Aminomethyltransferase beta-barrel domain 355 435 IPR046885 -
Phco9g00671 488 Pfam tRNA methyl transferase PRC-barrel domain 283 345 IPR046884 -
Phco9g00671 488 Gene3D Translation factors 354 444 - -
Phco9g00671 488 CDD tRNA_Me_trans 75 435 IPR004506 GO:0008033|GO:0016740
Phco9g00671 488 Pfam tRNA methyl transferase HUP domain 75 278 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00671 9 4987370 4990823 Phco9g00671 9 4987370 4990823 ECH