Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00651 ATGAACAACAACTGGCTTTCCTTCCCTCTTTCTCCTACTCATTCTTCCTTACCATCCCATGATCTTCAAGCAACTCAATACCATCAGTTTTCCCTTGGGCTGGTGAACGAGAGCATGGAAAACCCTTTCCAAAATCATGATTGGAATATGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCCAATGATTCAGATTATCTGTTCACAAACAACAGTCTCGTGCCTTTGCAAAACCCTGTGGTGGACACACCTAGCAATGAGTATCAAGAAAATGCTAATAGTAATTTGCAATCGTTGACATTGTCCATGGGAAGTGGTAAGGATTCTACATGTGAAACCAGTGGTGAAAACAGTACAAACACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGGCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATTAGAAGGAAAAGTAGTGGTTTCTCCAGGGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGAAGGTGGCAAGCAAGGATTGGGAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTCAATGCTGTGACAAACTTTGACATGAGTCGTTACGATGTGAAAGCCATTCTGGAAAGCAACACTCTCCCCATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCCTCTAGAAAACGTGAAGAGATGATTGCACTAGGCTCATCCACCTTCCAATATGGAACCTCAAGCTCTTCTAGGCTACACGCTTACCCTCTAATGCAACACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATAAGTTCTCACTTCTCTCACCAAGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGCGGTTACCTTCAGAACCCAGCATTGCTTCAGGGAATGGTGAACATGGGGTCTTCTTCTTCATCTTCATCTGTGTTGGAGAATAACAACAACAATAATAGTAATGTTGGTGGGTTTTTAGGGAGTGGGTTTGGTATGGCTTCGAATGCATCGTCGGGTAATGCGGTGGGCACGGCGGAGGAACTTGGATTGGTGAAAGTTGACTATGACATGCCGGCCGGAGGTTACAGCGGTTGGTCGGCGGCGGCGGCGGCGGAATCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA 1629 0.4543 MNNNWLSFPLSPTHSSLPSHDLQATQYHQFSLGLVNESMENPFQNHDWNMINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDISSHFSHQDPLHQGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNPALLQGMVNMGSSSSSSSVLENNNNNNSNVGGFLGSGFGMASNASSGNAVGTAEELGLVKVDYDMPAGGYSGWSAAAAAESMQTSNGGVFTMWNE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00651 542 SMART rav1_2 163 232 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 SMART rav1_2 262 326 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 ProSiteProfiles AP2/ERF domain profile. 262 320 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 FunFam AP2-like ethylene-responsive transcription factor ANT 162 228 - -
Phco9g00651 542 SUPERFAMILY DNA-binding domain 261 322 IPR016177 GO:0003677
Phco9g00651 542 CDD AP2 261 322 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 Gene3D AP2/ERF domain 163 228 IPR036955 GO:0003700|GO:0006355
Phco9g00651 542 Gene3D AP2/ERF domain 262 322 IPR036955 GO:0003700|GO:0006355
Phco9g00651 542 ProSiteProfiles AP2/ERF domain profile. 163 226 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 CDD AP2 162 228 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 FunFam AP2-like ethylene-responsive transcription factor 261 322 - -
Phco9g00651 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 414 - -
Phco9g00651 542 Pfam AP2 domain 163 218 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 Pfam AP2 domain 263 312 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Phco9g00651 542 SUPERFAMILY DNA-binding domain 162 228 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00651 Phco-Chr9 4829729 4832554 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco9g00651 AP2 2.5e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00651 9 4829729 4832554 Phco9g00651 9 4829729 4832554 ECH