Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00633 ATGCCGATGCAACAAATTCATGCTTCAAATTCAGGTCCAAGCTATCTCATTCCTCAGAGGCCATGCCTCCGTGGCATTCCTCATCCTTCTTTTCAGCTTTGGTCAAGGCTATCATCGTTTCCAAGCCAAAGGAAGCTAAAAAGGGTGAGCCATGGTTGCAGAAATGATGTCACCAAAATCAAAGCTGTGGCTGTGACTGCTGCTGAAAAGAAATCAGTGAAGGTTAAAGCCACCATAAGTGTTCAGCCAACGGTTGGTGGGATTTTCTCAGAAAGGGCTATAGAACGAGGGATGGATGATATAATGGATTTGCTGGGCAAATCACTTCTCTTGGAACTTGTTAGCGCTCAGCTTGATCCCAAGACAAAATTAGAGAAGAAAACCCTGGAACATTATGCACACAGGACGCATCAATCAGCAGAGGAAGTTAGGTATGAGGCTGAGTTTGAAGTGCCAGAAAGCTTTGGAGAGATTGGAGCGCTTTTGGTGGAGAACGAACATCACAGGGAAATGTTCGTGAGAGAAATTGTTCTTGATGGCTTCGAATTGGGTCCCGTCAGATTTGCCTGCGAGTCATGGCTTCATTCCAAGCATGACAACCCTGAGAAAAGGGTTTTTTTCCCCAACAAGTCATATTTGCCATCAGAAACACCAGAAGGAGTGAAAAGGTTAAGAGAAGCGGAACTAGACACTTTACGAGGGAATGGACAAGGAGAACGGCAGAGCTTTGACAGAGTATACGATTACGATGTCTACAACGACCTTGGAGATCCAGATAAAGACTCCGATCTCAGTAGACCGGTTCTTGGTGGCCCAGAACATCCTTATCCAAGGCGTTGCAGAACAGGGAGGCCTCGCACCAAAGAAGATCCATTCTCGGAGAAGAGAAGTAGCACGGTGTACGTGCCTAGAGACGAATGCTTCTCCGAAGTAAAGCAATTAACGTTTAATACAAAGTCGCTGGCTTCGGCATTGCATGCGTTGATACCGGCGCTGAAGACAGTGATAGTTGACAAGAATCTAGGGTTCCCTGTTTTCTCAGAAATAGATGCTCTTTTCGATGAAGGACTTCCCCTGCCTTCTCGAAATGTCAAAATCAGCAATCTTTTGCCCAGGATCGTCAGCTTTATTAAGGACAAAGGAGAGGACCTTCTCCGTTTCAATCCTCCCGCAACAATGGAGAGGGATAGATTCTTTTGGTTGAGGGACGAGGAATTTGGAAGACAGACTCTAGCGGGTCTTAACCCTTGTTGCCTCCAATTGGTCACGGAATGGCCATTGAAAAGCAATCTTGATCCTGAAGTTTATGGCCCTGCGGAATCAGCCATCAGCACTGAATTAGTTGAGCGGGAAATAAGAGGATTCCTCACAGTGGAAGAGGCCATAAAACAGAAGAAACTGTTCGTCCTGGACTACCATGATTTGTTGTTGCCATTAGTGGAGGAGGTGAGAAAACTAGAAGGCAGAACGCTGTACGGATCAAGGGCATTGTTCTTCCTAACCGACGATGGCACATTGAGACCACTGGCTATTGAACTGACTCGGCCACCAATTGATGGAAAACCCTATTGGAATGAAGTCCTCACACCTACCTGGCACGCAACCGGTGTTTGGCTATGGAGGCTGGCCAAAATCCATATCCTAACTCACGACTCTGGTTACCACCAACTCGTCAGTCACTGGTTAAGAACTCATTGTGCAACAGAGCCATACATCATAGCAGCAAACAGGCAAATGAGTGCAATGCATCCGATCTACAGATTACTGCATCCGCATTTCCGTTACACGATGGAGATCAACGCGCTTGCTCGAGAGTCTTTGATAAACGCCGGCGGAGTAATAGAGGAAAATTTTCTTCCAGGGAAACACTCCATTCTGCTAAGCTCAATCGCCTACGACAAACACTGGCGATTTGACCACCAAGCGCTCCCCAAGGACCTCATCCACAGGGGCATGGCCGTCGAGGATCCCACCGCCCCTCACGGCCTCAAACTCACCATCGAAGACTACCCTTACGCCAATGACGGCCTCGTTCTCTGGGACGCCCTCAAAACCTGGTTCACCGAATACGTCGACCACTACTACGCCGACTCCACCGCTGTTCAATCGGACACAGAACTCCAAGCCTGGTGGGAAGAGGTCATAACCGTTGGACATGCTGACAAAAAGGATGAACCGTGGTGGCCGGTGCTGAAAACCAAAGAGGACCTCGTTGAAATCGTGACGACCATTGCGTGGACAGCTTCGGGCCACCATGCTGCTGTGAACTTCGGACAATTCACCTTTGCGGGCTATTTCCCCAACAGGCCAACCGTTGTGCGTAACAACATGCCCATAGAGGACCCTTCGGACCCGGAGTGGGAGCTGTTCTTGCAGAAACCCGAGGTGACTATGTTGAAGTCTTTTCCATCGCAGATTCAGGCCGCCACAGTGATGACGGTGTTGGACATTCTATCGAATCACTCGCCGGACGAGGAGTATCTCGGGGCGTCAGTGGAGCCGGCGTGGGAGGAGGAGCCTCTTGTGAAGGCGGCGTTTGAGAAGTTCAGAGGGAAATTGCTTGAGCTTGAAGGGTTGATCGATGCCAGGAATGCAGATACGACGAGGAGGAACCGGAACGGCGCCGGGGTTGTGCCCTATGAACTACTGAAGCCGACGTCGGAGGCCGGAGTTACGGGAAAGGGTGTTCCTTACAGCATCTCCATTTAA 2709 0.4939 MPMQQIHASNSGPSYLIPQRPCLRGIPHPSFQLWSRLSSFPSQRKLKRVSHGCRNDVTKIKAVAVTAAEKKSVKVKATISVQPTVGGIFSERAIERGMDDIMDLLGKSLLLELVSAQLDPKTKLEKKTLEHYAHRTHQSAEEVRYEAEFEVPESFGEIGALLVENEHHREMFVREIVLDGFELGPVRFACESWLHSKHDNPEKRVFFPNKSYLPSETPEGVKRLREAELDTLRGNGQGERQSFDRVYDYDVYNDLGDPDKDSDLSRPVLGGPEHPYPRRCRTGRPRTKEDPFSEKRSSTVYVPRDECFSEVKQLTFNTKSLASALHALIPALKTVIVDKNLGFPVFSEIDALFDEGLPLPSRNVKISNLLPRIVSFIKDKGEDLLRFNPPATMERDRFFWLRDEEFGRQTLAGLNPCCLQLVTEWPLKSNLDPEVYGPAESAISTELVEREIRGFLTVEEAIKQKKLFVLDYHDLLLPLVEEVRKLEGRTLYGSRALFFLTDDGTLRPLAIELTRPPIDGKPYWNEVLTPTWHATGVWLWRLAKIHILTHDSGYHQLVSHWLRTHCATEPYIIAANRQMSAMHPIYRLLHPHFRYTMEINALARESLINAGGVIEENFLPGKHSILLSSIAYDKHWRFDHQALPKDLIHRGMAVEDPTAPHGLKLTIEDYPYANDGLVLWDALKTWFTEYVDHYYADSTAVQSDTELQAWWEEVITVGHADKKDEPWWPVLKTKEDLVEIVTTIAWTASGHHAAVNFGQFTFAGYFPNRPTVVRNNMPIEDPSDPEWELFLQKPEVTMLKSFPSQIQAATVMTVLDILSNHSPDEEYLGASVEPAWEEEPLVKAAFEKFRGKLLELEGLIDARNADTTRRNRNGAGVVPYELLKPTSEAGVTGKGVPYSISI 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00633 902 SMART LH2_4 73 209 IPR001024 GO:0005515
Phco9g00633 902 ProSitePatterns Lipoxygenases iron-binding region signature 1. 555 569 IPR020833 GO:0016702|GO:0046872
Phco9g00633 902 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 211 902 IPR013819 GO:0016702|GO:0046872
Phco9g00633 902 FunFam Lipoxygenase 213 311 - -
Phco9g00633 902 ProSitePatterns Lipoxygenases iron-binding region signature 2. 582 592 IPR020834 GO:0016702|GO:0046872
Phco9g00633 902 FunFam Lipoxygenase 534 901 - -
Phco9g00633 902 Gene3D - 312 397 IPR027433 -
Phco9g00633 902 Gene3D - 213 311 - -
Phco9g00633 902 PRINTS Plant lipoxygenase signature 424 443 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 385 401 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 492 516 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 178 196 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 204 225 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 815 829 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 275 294 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 340 361 IPR001246 GO:0016491
Phco9g00633 902 PRINTS Plant lipoxygenase signature 243 259 IPR001246 GO:0016491
Phco9g00633 902 MobiDBLite consensus disorder prediction 256 296 - -
Phco9g00633 902 CDD PLAT_LH2 73 209 IPR042057 -
Phco9g00633 902 PRINTS Lipoxygenase signature 555 572 IPR013819 GO:0016702|GO:0046872
Phco9g00633 902 PRINTS Lipoxygenase signature 575 595 IPR013819 GO:0016702|GO:0046872
Phco9g00633 902 PRINTS Lipoxygenase signature 537 554 IPR013819 GO:0016702|GO:0046872
Phco9g00633 902 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 65 212 IPR036392 GO:0005515
Phco9g00633 902 Gene3D - 535 901 - -
Phco9g00633 902 MobiDBLite consensus disorder prediction 277 296 - -
Phco9g00633 902 FunFam Lipoxygenase 417 551 - -
Phco9g00633 902 Pfam Lipoxygenase 221 885 IPR013819 GO:0016702|GO:0046872
Phco9g00633 902 ProSiteProfiles PLAT domain profile. 88 208 IPR001024 GO:0005515
Phco9g00633 902 PANTHER LIPOXYGENASE 74 902 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco9g00633 902 SUPERFAMILY Lipoxigenase 213 902 IPR036226 -
Phco9g00633 902 Gene3D PLAT/LH2 domain 51 212 - -
Phco9g00633 902 Pfam PLAT/LH2 domain 127 207 IPR001024 GO:0005515
Phco9g00633 902 Gene3D - 399 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00633 Phco-Chr9 4644333 4649431 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00633 9 4644333 4649431 Phco9g00633 9 4644333 4649431 ECH