Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00627 ATGGCATACAAAGAATACGTACTTCTTCCTCTCATTGCTCTAGTTTCCTTATTGATTACTGTCACAAAAACCGTGGCCATTACTCCAGAAATAGCTTTGTTGAATCGCAACAGTTTCCCAAATGGCTTCATCTTTGGTACAGCATCCTCAGCATACCAGTATGAAGGTGCATCAAATGAGGGTGGTAGAGCACCAAGTATTTGGGATACCTTCACTCATAAATATCCAGAAAGGATAGACGACAGAAGCAATGGAGATGCTGCGGTGGATTCGTATCATCGTTACAAGGAAGATGTTCAGATTATGAAGGATATGAATTTGGATGCTTACAGATTTTCCATATCTTGGTCAAGAATAATTCCGAATGGAAAGCTAAGTGGAGGAATAAACCAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTACTGGCAAAGGGTTTAGAACCATTTGTGACTCTTTTCCATTGGGATCTTCCTCAAACTTTAGAAGATGAATATGGTGGCTTCTTAAGTCCTCGCATTGTGAAAGATTTCCAGGACTATGCAGAACTTTGCTTCAAGGAATTTGGAGATAGAGTGAAGCACTGGATAACTTTGAATGAGCCATGGGCTTACAGCATGAAGGGTTATGCAGAAGGGACAAAGGCCCCAGGTCGATGTTCTTCTTGGTCGAATCCTGATTGCAATGGTGGTGATTCTGGGACTGAACCCTATTTGGCTACACATTACCAACTTCTTGCTCATGCCGCAGCTGTTAATCTGTACAAGACAAAGTATCAGAGATTTCAGAATGGTGTGATAGGCATAACACTGTATTCTATTTGGTACGAGCCACTCTCAGAGAGCAAACTTGATCAAAAGGCTGCTGAACGAGCTATTGACTTCTTGTTTGGATGGTTTATGGATCCACTGACAAGAGGAGATTATCCAAAAAGCATGCGCTCCTTGGTAAAATCAAGATTACCAAAGTTTACCAGGGAGCAATCCAGATTGCTTATCAATTCATTTGATTTTCTCGGCATGAACTACTACACTGCGAATTATGCCTCTGATGCACCTGAATTAAGAAATGTCAGAGGCAATTATCTGACAGATTCCCTTGTAAATTTTTCATTTGTGCGTGACGGAAAACCCATTGGTGAAAATGTTGGTTCAGACTGGTTGTACGTTTATCCAAAAGGATTTCGTGAAATTTTGCTATATACCAAAGAGAAATACAACAATCCTGTAATTTATATTACTGAAAATGGTGTAAGTGAATATGATGATCCATCACTATCACTTGAAGAATCTCTCTTGGATAGTTACAGAATTGATTATTATTATCGTCATTTGTATTATCTTCGTGATGCAATGAAGAAGGGTGTAAATGTAAAAGGGTATTTCGCATGGTCTCTTTTAGACAATTTTGAATGGGAAAATGGTTACCTCATGCGATTTGGAATACACTATGTTGATTACAACAATGGCTTGAAAAGATACTCAAAGCTTTCTGCTTTATGGTTCAAGGATTTTCTCAAAATAGAAACCAAACTTCATGATTCCATGTAA 1557 0.3866 MAYKEYVLLPLIALVSLLITVTKTVAITPEIALLNRNSFPNGFIFGTASSAYQYEGASNEGGRAPSIWDTFTHKYPERIDDRSNGDAAVDSYHRYKEDVQIMKDMNLDAYRFSISWSRIIPNGKLSGGINQEGIDYYNNLINELLAKGLEPFVTLFHWDLPQTLEDEYGGFLSPRIVKDFQDYAELCFKEFGDRVKHWITLNEPWAYSMKGYAEGTKAPGRCSSWSNPDCNGGDSGTEPYLATHYQLLAHAAAVNLYKTKYQRFQNGVIGITLYSIWYEPLSESKLDQKAAERAIDFLFGWFMDPLTRGDYPKSMRSLVKSRLPKFTREQSRLLINSFDFLGMNYYTANYASDAPELRNVRGNYLTDSLVNFSFVRDGKPIGENVGSDWLYVYPKGFREILLYTKEKYNNPVIYITENGVSEYDDPSLSLEESLLDSYRIDYYYRHLYYLRDAMKKGVNVKGYFAWSLLDNFEWENGYLMRFGIHYVDYNNGLKRYSKLSALWFKDFLKIETKLHDSM 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00627 518 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 43 57 IPR033132 -
Phco9g00627 518 FunFam Beta-glucosidase 12 25 510 - -
Phco9g00627 518 ProSitePatterns Glycosyl hydrolases family 1 active site. 413 421 IPR018120 -
Phco9g00627 518 SUPERFAMILY (Trans)glycosidases 27 509 IPR017853 -
Phco9g00627 518 Gene3D Glycosidases 24 510 - -
Phco9g00627 518 PRINTS Glycosyl hydrolase family 1 signature 457 474 IPR001360 GO:0004553|GO:0005975
Phco9g00627 518 PRINTS Glycosyl hydrolase family 1 signature 481 493 IPR001360 GO:0004553|GO:0005975
Phco9g00627 518 PRINTS Glycosyl hydrolase family 1 signature 436 447 IPR001360 GO:0004553|GO:0005975
Phco9g00627 518 PRINTS Glycosyl hydrolase family 1 signature 337 351 IPR001360 GO:0004553|GO:0005975
Phco9g00627 518 PRINTS Glycosyl hydrolase family 1 signature 413 421 IPR001360 GO:0004553|GO:0005975
Phco9g00627 518 PANTHER GLYCOSYL HYDROLASE 38 511 IPR001360 GO:0004553|GO:0005975
Phco9g00627 518 Pfam Glycosyl hydrolase family 1 36 509 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00627 Phco-Chr9 4580318 4584476 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00627 9 4580318 4584476 Phco9g00627 9 4580318 4584476 ECH
Phco10g01722 10 39801472 39802828 Phco9g00627 9 4580318 4584476 PCT