Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00567 ATGACAAACGCACAGGGCGGCTCCATCTTGGTGGAGCCAAACACGCACAACAACGCCTTACACAGACCCAAATTTGGAGCATTATTGCACTCCGAACCCACCTCGCCTTACCCCTCCAACAACGACGATGATAACTTCCAATACAACCGCCGCAGCAACGCCGCCCACACAAACTACACCGACAGCAGCAACAATGTCTCTCCCTACTCCATGTCCCCATGGAACTACCAACGCGATTCTTCTTCTCCTCTCAAAAAGTCTCCATGGTTATTACCCGCCTCACCTGCGATAAACCTCTTCCACCACCAACAAGACGACATCCCTGGAAACAGCCTCATCGGATCCCTCGTTCGCGAAGAGGGTCACATATATTCCTTGGCCGTTTTCGGGGACTTGTTATACACAGGCTCCGACAGCAAGAACATAAGAGTTTGGAAGCATCTCAAGGACTACACTGGCTTCAAATCAAGCAGTGGATTGGTAAAAACCATAATAATCTCCGGCGAAAAAATCTTCACGGGCCACCAAGACGGGAAAATCAGAGTGTGGAAGGTTTCGTCCAAGAATCCAAGCAAGCATAAACGCGTCGGGAGTTTGCCAACGTTCAAAGAGTACGTCAAGTGTTCCATGAACCCCAAGAATTACGTGGAGGTTCGGCGGAACCGAAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGTCTGAGCCTGGACAAGGAGGAAGGGTTGCTGTACTCCGGGTCGTGGGACAAGACGGTCAAGGTGTGGCGCGTGGCGGATTCCAAGTGCTTGGAGTCGATCAACGCGCACGACGATGCGGTGAACGCGGTGGTGGCGATGTCCGGAGGGTGGGTGTTAACGGGGTCCGCGGATGGGACGGTCAAGATGTGGAGGAGGGTGCGGGATGAGAAGGGGAAGAAGCCAAAGCATCTGTTGGACCGGATTTTGCTGGAGCAGGAGAATGCGGTTACAGCGCTGGCGGTGAACCCTACGGCCACGGTGCTTTATTGCGGTTCCTCTGATGGTATGGTGAACTTCTGGGAGATTGACGAGAAGTGTGGGTTTACCCACGGCGGCGTTTTAAGGGGGCACAAGCTTGCCGTGCTCTGCCTGGCCGTGGCGGGGAACCTTCTCTTCAGTGGGTCAGCGGATAAGAACGTGTGTGTGTGGAAGCGCGACGAGAGTGGGTTCCACGCCTGCCATTCGGTTCTGACGGGTCACATGGGTCCTGTTAAATGTATCGCCGTGGAGGAGGATCAGGCGCAACAGGAGAAGCCTCGCGAGAAAGGTGATCAGCGGTGGATTGTGTACACGGGGAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTGTCTGAACAGACGCCGGAGTTGAGCTCGTTCCAAAGCTGGGCCACTCCGGGTCGATTTACCACATAG 1419 0.5483 MTNAQGGSILVEPNTHNNALHRPKFGALLHSEPTSPYPSNNDDDNFQYNRRSNAAHTNYTDSSNNVSPYSMSPWNYQRDSSSPLKKSPWLLPASPAINLFHHQQDDIPGNSLIGSLVREEGHIYSLAVFGDLLYTGSDSKNIRVWKHLKDYTGFKSSSGLVKTIIISGEKIFTGHQDGKIRVWKVSSKNPSKHKRVGSLPTFKEYVKCSMNPKNYVEVRRNRNAVKVKHFDAVSSLSLDKEEGLLYSGSWDKTVKVWRVADSKCLESINAHDDAVNAVVAMSGGWVLTGSADGTVKMWRRVRDEKGKKPKHLLDRILLEQENAVTALAVNPTATVLYCGSSDGMVNFWEIDEKCGFTHGGVLRGHKLAVLCLAVAGNLLFSGSADKNVCVWKRDESGFHACHSVLTGHMGPVKCIAVEEDQAQQEKPREKGDQRWIVYTGSLDKSVKVWRVSEQTPELSSFQSWATPGRFTT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00567 472 SMART WD40_4 355 392 IPR001680 GO:0005515
Phco9g00567 472 SMART WD40_4 398 450 IPR001680 GO:0005515
Phco9g00567 472 SMART WD40_4 147 184 IPR001680 GO:0005515
Phco9g00567 472 SMART WD40_4 261 299 IPR001680 GO:0005515
Phco9g00567 472 SMART WD40_4 223 258 IPR001680 GO:0005515
Phco9g00567 472 SMART WD40_4 310 349 IPR001680 GO:0005515
Phco9g00567 472 SMART WD40_4 109 146 IPR001680 GO:0005515
Phco9g00567 472 MobiDBLite consensus disorder prediction 1 15 - -
Phco9g00567 472 MobiDBLite consensus disorder prediction 1 20 - -
Phco9g00567 472 MobiDBLite consensus disorder prediction 33 49 - -
Phco9g00567 472 Gene3D - 221 307 IPR015943 GO:0005515
Phco9g00567 472 Gene3D - 97 220 IPR015943 GO:0005515
Phco9g00567 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 392 IPR001680 GO:0005515
Phco9g00567 472 Pfam WD domain, G-beta repeat 360 392 IPR001680 GO:0005515
Phco9g00567 472 Pfam WD domain, G-beta repeat 263 298 IPR001680 GO:0005515
Phco9g00567 472 Pfam WD domain, G-beta repeat 322 348 IPR001680 GO:0005515
Phco9g00567 472 Pfam WD domain, G-beta repeat 401 449 IPR001680 GO:0005515
Phco9g00567 472 Pfam WD domain, G-beta repeat 229 257 IPR001680 GO:0005515
Phco9g00567 472 Pfam WD domain, G-beta repeat 120 146 IPR001680 GO:0005515
Phco9g00567 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 259 - -
Phco9g00567 472 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 59 455 IPR045182 -
Phco9g00567 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 298 IPR001680 GO:0005515
Phco9g00567 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Phco9g00567 472 PRINTS G protein beta WD-40 repeat signature 171 185 IPR020472 -
Phco9g00567 472 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Phco9g00567 472 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Phco9g00567 472 FunFam BnaA09g28200D protein 216 303 - -
Phco9g00567 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 351 IPR001680 GO:0005515
Phco9g00567 472 MobiDBLite consensus disorder prediction 28 49 - -
Phco9g00567 472 CDD WD40 120 450 - -
Phco9g00567 472 SUPERFAMILY WD40 repeat-like 110 457 IPR036322 GO:0005515
Phco9g00567 472 Gene3D - 308 467 IPR015943 GO:0005515
Phco9g00567 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00567 Phco-Chr9 4094690 4096108 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00567 9 4094690 4096108 Phco9g00567 9 4094690 4096108 ECH