Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00559 ATGCCTCCTTCTCAGCCACCCCATTGGGCCCCATCTCCATCTCCATCTCCATCTCCATCTCCAACCCCAACGCCAACACCAACACCAACACCAACACCAATATTCAACAAATCATTCTTGCCACCACCATCCAACTCGCCGGCGGTTGACTTCAGCCCCCCATTGATAGCAATGGTCGTAGTCGTCGCTGCCGCCTTTCTCGTCGTAACCTACTCCCGCCTCATCGCGCGCCACCTCAGGCCGCCACTCCACCGCCTCCTCCACCGCTTCCGGCGGCGGAGATTCCCTCCGTCTTCCGTCGGCGACCTCGAGTCCCTACCCTACGAGTCTCCCTTTGACGGCTCGCGCGTCTTCTCTCCCTACGGTTTAGACGAAACGGTGATTAAAACGATACCGTTTTCGCTTTACACCGCCAAATACGATGCGCGTTTCGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTGGAATTCGAAGACGAAGACTACGTGAGAACGCTTCCCGTTTGTTCACACACGTTCCACGTGGACTGCATCGATGCGTGGCTTCGATCGCACGCTAACTGCCCTCTCTGCCGCGCTGGAGTCCTCTGCGCCGATTCGCCTTTCACTCCGATGATGGCCGCAAGAATCCGACCAAGCCTAGACGACGACACAATTCTCCACCGCATTAGCTTAGACCCTCTCCTCGACCCCCCACCGCCTCTGGCAATCTCCGCCGTGCCGGAGATAACACCCTGCATCGACGAGCAATCTCCGAGGAGGAACCAGAATCACGCGAACGTTAACTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGGTTTGAACGGAGTGTCGCGTCAGAGAGGATGGTGATGGAAGCCGCCACTGCGTCGCCGTGGCGGTACCGAAGAGGGAGTAATAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGGTCTTTGGGGAAACCAAGGGTGTTTTCATTTCGGTATTATAGAGGGATGAAATCACCGTTCTTCCGGCGGAGGGGATTTTTCCCGCTGTCGGAGTCCAGCGTGAGGTACGGCGGCGGCGGGAGCTCATCGCGGCGGAGCAAGTCGATTGCTAGCCCAATGTTTCTGCGGTCTTCGGGACTGGCAGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTATCGCCGGAGAGATTTAACCGGAGACTGTGGTGGGGGGAGAGGGTTTTAAAGAGGAAGCTCATAAATGACAGAGAATGGATAGAGGCTAGGCATTGGCATTGGCATGGCACCCTTGTACTACTCATTTACATGCTCAAGAGGGTTGTCTTGCTTCATGTAGTTTCTTTATGGCACCGACTGAAGGCCCCCATGTGGATGGATTGA 1395 0.5642 MPPSQPPHWAPSPSPSPSPSPTPTPTPTPTPTPIFNKSFLPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPLHRLLHRFRRRRFPPSSVGDLESLPYESPFDGSRVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRISLDPLLDPPPPLAISAVPEITPCIDEQSPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSVASERMVMEAATASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRRLWWGERVLKRKLINDREWIEARHWHWHGTLVLLIYMLKRVVLLHVVSLWHRLKAPMWMD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00559 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 197 IPR013083 -
Phco9g00559 464 PANTHER RING-H2 FINGER PROTEIN ATL16 40 216 IPR044600 GO:0016567|GO:0016740
Phco9g00559 464 SMART ring_2 151 192 IPR001841 -
Phco9g00559 464 MobiDBLite consensus disorder prediction 1 39 - -
Phco9g00559 464 FunFam RING-H2 finger protein ATL65 116 197 - -
Phco9g00559 464 SUPERFAMILY RING/U-box 135 198 - -
Phco9g00559 464 CDD RING-H2_EL5-like 150 193 - -
Phco9g00559 464 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Phco9g00559 464 Pfam Ring finger domain 149 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00559 Phco-Chr9 4047381 4049133 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00559 9 4047381 4049133 Phco9g00559 9 4047381 4049133 ECH