Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00548 ATGGAGGATTATGCCAGCAGCGACGAGGATTACCATTACGACTCCGATCAAGATGACTCCGTCGAGGCTTATGAAAACGACGAGGATTACGCGTTGCTATCTTCCAAGGGTCCCACTACTAAGGTGATTACAAAGGAATCACTTTTGGTTGCACAGAAGGAGGATTTGCGCAGAGTGATGGAGATGCTATCGGTAAGAGAGCAACATGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGAAAAGCATTTCTCTTTGGTGAGGCTGGTGTTAGTGTGGATCAACATCCCGACTCTGACTCATCCGTTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTGCTAGGGTTGAAACAACAAGAATGGACTGTGGTCATTGCTTTTGCAACTCCTGTTGGATTGAACATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTCGTTAGAACTCTACTCAGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGCGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCGTGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAACGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCACAGCTGTGGTCGCTACAAAGAGCAAGAAAAATCGGCAGAACGTGCAAAGAGGGATCTATATCGGTATATGCATTATCATAATCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTTTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGGGATGAGCTTTTTAAGGAAGAAATGACAGATGCGCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCACCCTCTCAACAATTATTGATAAGCTTTGTCAGAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTCTCGGTTTGCTGGAACAACAAAGTCAGTACTGGTGTAACAGCAGAACTTGATCGGCCTTCCGGATCAGGGAGTTCAGATGATAATGGATGCTCTTCTCGTAAACGTGCTAGAAAAGATGGTCTTGGAGGTGGTTTTTTTGATCTAAACTTGCCGGCAGAGTTTGTAGACAGGAATTGA 1737 0.4174 MEDYASSDEDYHYDSDQDDSVEAYENDEDYALLSSKGPTTKVITKESLLVAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVSVDQHPDSDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKSAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILTLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVSTGVTAELDRPSGSGSSDDNGCSSRKRARKDGLGGGFFDLNLPAEFVDRN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00548 578 MobiDBLite consensus disorder prediction 534 554 - -
Phco9g00548 578 MobiDBLite consensus disorder prediction 1 20 - -
Phco9g00548 578 SMART ibrneu5 261 326 IPR002867 GO:0008270
Phco9g00548 578 SMART ibrneu5 191 253 IPR002867 GO:0008270
Phco9g00548 578 MobiDBLite consensus disorder prediction 534 549 - -
Phco9g00548 578 SUPERFAMILY RING/U-box 191 259 - -
Phco9g00548 578 FunFam RBR-type E3 ubiquitin transferase 249 496 - -
Phco9g00548 578 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Phco9g00548 578 SUPERFAMILY RING/U-box 116 203 - -
Phco9g00548 578 Gene3D - 249 496 - -
Phco9g00548 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 394 IPR031127 GO:0004842|GO:0016567
Phco9g00548 578 SUPERFAMILY RING/U-box 261 318 - -
Phco9g00548 578 CDD Rcat_RBR_ARI1-like 274 327 - -
Phco9g00548 578 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270
Phco9g00548 578 CDD RING-HC_RBR_TRIAD1 118 171 - -
Phco9g00548 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 206 IPR013083 -
Phco9g00548 578 CDD BRcat_RBR_ANKIB1 198 262 - -
Phco9g00548 578 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Phco9g00548 578 Pfam Ariadne domain 330 578 IPR045840 -
Phco9g00548 578 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00548 Phco-Chr9 3996512 3999658 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00548 9 3996512 3999658 Phco9g00548 9 3996512 3999658 ECH