Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00542 | ATGGACATTGATTTCAAAGACTACCAGTTGCGCTGCGAGCTTCGGGGTCACGAAGATGATGTTCGCGGAATATGCGTTTGCGGCAGCGAGGCCATAGCGACGTCGTCGAGGGACCGGACGGTTAGGTTGTGGTCTCTGGACAGCAACCGCAAGTTCGTGAGTTCCAAGATTCTGTTGGGGCACACGAGCTTTGTGGGACCTTTGGCGTGGATTCCCCCGAATTCGGAGTTTCCGCTTGGTGGGGTTGTGTCTGGCGGCATGGACACTCTGGTCTTTGTCTGGGACTTGAAAACTGGTGAGAAGGTTCATACTCTCAAGGGCCATCAGTTGCAGGTCACTGGCATTGCGCTTGACGAAGGGGATGTTGTGTCCTCTTCTGTTGATTGTACCTTAAGACGGTGGAGAAATGGGCAAGCTGTAGAGACGTGGGAAGCTCATAAGGCACCCGTCCAAGCAGTTATAAAGCTGCCATCAGGAGAGTTTGTTACTGGTTCAAGTGACACTACTTTAAAGCTTTGGAGAGGAAAAACTTGCATACATACCTTTGAAGGACATTCAGATACAGTTCGTGGGTTGTCTGTGATGTCTGGTCTTGGAATCCTATCTGCATCCCATGATGGTTCTCTTAGATTATGGGCAGTAAGTGGTGAAATGTTAATGGAGATGGTCGGTCACACTGCCATTGTTTATTCAGTTGATTCACATGCATCGGGACTTATTGTCAGTGGTAGTGAAGATCGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAACATCCTGGCTGTGTTTGGGATACAAAGTTTATGGAAAATGGGGATATCGTGACAGCATGTTCAGATGGAGTTGTACGCGTTTGGACTGTAGATCAGAATAATGTTGCTGAACAGCTAGAGCTTGATTTATACACTTCAGAACTTAATCAGTACAAATCTAGTAGGAAGCGGGTTGGAGGATTGAAATTAGAAGAGCTACCTGGCTTGGAGGCACTGAAGATCCCAGGAACAACTGATGGCCAGACAAAAGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGGATGGAACATGAGAGAACAGAAGTGGGATAAAATCGGTGAAGTTGTTGATGGACCTGAGGAGTCAAATCGTCAACTTTTTGATGGTATTCAGTATGATCATGTATTTGACGTGGATATTGGTGATGGTATGCCTATCCGTAAGTTGCCATACAATCGATCAGATAATCCATATGATATTGCTGATAAATGGCTACTCAAGGAGAATCTTCCACTTTCTTTTCGTGAGCAAATTGTACAGTTTATTCTTCAAAATACTGGACAAAACAATGTTACTTTTGATGCTTCATTTCGAGATCCCTATACTGGCTCCCATGCTTACGTACCAGGACAACCTTCTTATTTGTCTGATAATTCTGCAAAACCCACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATGCAGCTCAGTTTGACGGGATTCTTAAAAAGATTAGTGAGTTCAATATTGCATTACAATCTGACCAGGAAAAACAGAACTTGTCTTTGACTGATCTCAATGTTTCTAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCACATTATCACTCTAGTAAATTTGCAGACTCTGATATAGACTTGTTACTGAATCTGGTTCGATCATGGCCTATTTCAATGATATTTCCTGTCATTGATATCATAAGGATGATTGTTCTTCATCCAGATGGGTCTATTTTACTTCACAAGCGTTTTGAAGCAGAAAACGACATACTAGTGGAGGTGATTAAGAAAGTCACTGTAAATCCAACAATTCCTGCAAATCTGTTGACCAGCATCCGTGCTGTAACTAATCTCTTCAGGAATTCGTGCTACTACAACTGGTTGCAGAAACATCGTAGTGAGATACTTGATGCTTTCTCAAGTTGTAGTTCATCTCCAAACAAAAATTTGCAGCTGTCATACTCTACCTTGTTACTAAATTATGCTGTGCTGTTGATTGAATCAAAGGATCAAGAAGGTCAATCTCAAGTTCTGTCAGCAGCTCTTGAGCTTGCCGAGGATGAAAATGTAGAAGTTGATTCCAAATTTCGTGCTTTGGTTGCTGTTGGATCTCTGATGCTTGAGGGTCTTGTCAGAAAAATAGCTCTGGATTTTGATGTTTTGAACATTGCAAAAGCAGCTAAGGGTTCTAAGGATGCCAAGATTGCTGAAGTTGGATCTGACATTGAGCTGTTAACAAAGCAGAGCTGA | 2271 | 0.4258 | MDIDFKDYQLRCELRGHEDDVRGICVCGSEAIATSSRDRTVRLWSLDSNRKFVSSKILLGHTSFVGPLAWIPPNSEFPLGGVVSGGMDTLVFVWDLKTGEKVHTLKGHQLQVTGIALDEGDVVSSSVDCTLRRWRNGQAVETWEAHKAPVQAVIKLPSGEFVTGSSDTTLKLWRGKTCIHTFEGHSDTVRGLSVMSGLGILSASHDGSLRLWAVSGEMLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDTKFMENGDIVTACSDGVVRVWTVDQNNVAEQLELDLYTSELNQYKSSRKRVGGLKLEELPGLEALKIPGTTDGQTKVVREGDNGVAYGWNMREQKWDKIGEVVDGPEESNRQLFDGIQYDHVFDVDIGDGMPIRKLPYNRSDNPYDIADKWLLKENLPLSFREQIVQFILQNTGQNNVTFDASFRDPYTGSHAYVPGQPSYLSDNSAKPTFKHIPKKGMLVFDAAQFDGILKKISEFNIALQSDQEKQNLSLTDLNVSRLGAIVKILKDTSHYHSSKFADSDIDLLLNLVRSWPISMIFPVIDIIRMIVLHPDGSILLHKRFEAENDILVEVIKKVTVNPTIPANLLTSIRAVTNLFRNSCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLIESKDQEGQSQVLSAALELAEDENVEVDSKFRALVAVGSLMLEGLVRKIALDFDVLNIAKAAKGSKDAKIAEVGSDIELLTKQS | 756 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00542 | 756 | Pfam | PUL domain | 483 | 748 | IPR013535 | - | |
| Phco9g00542 | 756 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 222 | 253 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | ProSiteProfiles | PUL domain profile. | 481 | 752 | IPR013535 | - | |
| Phco9g00542 | 756 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 14 | 54 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | CDD | WD40 | 10 | 290 | - | - | |
| Phco9g00542 | 756 | Gene3D | - | 4 | 308 | IPR015943 | GO:0005515 | |
| Phco9g00542 | 756 | Gene3D | - | 375 | 450 | IPR038122 | - | |
| Phco9g00542 | 756 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 58 | 104 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | Pfam | PFU (PLAA family ubiquitin binding) | 337 | 445 | IPR015155 | - | |
| Phco9g00542 | 756 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 182 | 222 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SMART | WD40_4 | 175 | 213 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SMART | WD40_4 | 7 | 45 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SMART | WD40_4 | 215 | 253 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SMART | WD40_4 | 98 | 135 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SMART | WD40_4 | 51 | 95 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SMART | WD40_4 | 254 | 291 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SMART | WD40_4 | 136 | 174 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | SUPERFAMILY | WD40 repeat-like | 4 | 306 | IPR036322 | GO:0005515 | |
| Phco9g00542 | 756 | FunFam | Phospholipase A-2-activating protein isoform A | 481 | 753 | - | - | |
| Phco9g00542 | 756 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 14 | 50 | - | - | |
| Phco9g00542 | 756 | FunFam | Transducin family protein / WD-40 repeat family protein | 376 | 450 | - | - | |
| Phco9g00542 | 756 | Pfam | WD domain, G-beta repeat | 177 | 212 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | Pfam | WD domain, G-beta repeat | 12 | 45 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | Pfam | WD domain, G-beta repeat | 256 | 290 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | Pfam | WD domain, G-beta repeat | 219 | 253 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | Pfam | WD domain, G-beta repeat | 138 | 173 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | Pfam | WD domain, G-beta repeat | 99 | 134 | IPR001680 | GO:0005515 | |
| Phco9g00542 | 756 | Gene3D | - | 481 | 752 | IPR011989 | - | |
| Phco9g00542 | 756 | FunFam | Polyubiquitin binding protein (Doa1/Ufd3) | 4 | 310 | - | - | |
| Phco9g00542 | 756 | PANTHER | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN | 6 | 710 | - | - | |
| Phco9g00542 | 756 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 82 | 96 | IPR019775 | - | |
| Phco9g00542 | 756 | PRINTS | G protein beta WD-40 repeat signature | 32 | 46 | IPR020472 | - | |
| Phco9g00542 | 756 | PRINTS | G protein beta WD-40 repeat signature | 82 | 96 | IPR020472 | - | |
| Phco9g00542 | 756 | PRINTS | G protein beta WD-40 repeat signature | 200 | 214 | IPR020472 | - | |
| Phco9g00542 | 756 | ProSiteProfiles | PFU domain profile. | 357 | 452 | IPR015155 | - |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco9g00542 | 9 | 3943113 | 3953436 | Phco9g00542 | 9 | 3943113 | 3953436 | ECH |