Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00540 ATGGCCGTTCTTACACCTGCAAGTTCATGTTTTGGAGCAAAGTATAAGGCTCTAGCACCATTGAGAATTTTAAGGGGTCTGGTGTGTCTACTGGTTCTGCTTTCAACAGCATTTATAATGTTAGTGTTCTTTGGCTTTATAAGTGCTGTTATAGTTCGACTTTTTAGTGTCCGTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCCTGGCTTGCCTTGTGGCCCTTTCTATTTGAAAAGATCAACAAGACTAAAGTTGTATTTTCTGGAGATGATGTTCCTTCAAGAGAACGGATCTTACTGATAGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGAGGAAGGGATGCATTGGATATATAAAATATATACTTAAGAGCAGCTTGATGAGACTTCCAGTTTTTGGTTGGTCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCAGATGAGTCAATCATGCGCCATATGCTTTCAACATTCAAGGATCCCCAAGATCCTCTCTGGCTTGCTCTTTTCCCAGAAGGCACTGATTTTACTGACCAAAAGTGCCTTCGGAGTCAAAAGTATGCTGCTGAACATGGGTTACCAGTTCTGAAAAATGTCTTACTTCCAAAGACAAAGGGCTTCTGCGCCTGCTTGCAAGAGTTGAGGGAATCTCTCACTGCAGTTTATGACATAACCATTGGCTACAAACACCGCTGCCCATCTTTCTTGGACAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATCCGCCGCATCCCCCTCGATAGTATCCCGGTATCTGAAAGTGAAATGTCCACTTGGTTGATAAATAGATTCCAGTTGAAGGATCGGTTACTTTCCAAATTTCAAATTCAAGGCCAGTTTCCGGATCCAGCAACAGAAAGGGACCTCTCTAGTGTGAAGAGCATTTTGAATTGTATGACAATTGTTACCGTGACAGGCACATGCATGTACTACAGTTTTTCCTCTGTCTGGTTTAAACTTTATGTATCTCTAGTCTGTGCTTATTTGGTTCCAGCCACGTATTACAATATTCGGCCACAGCCCATTCTTAGCCTTTTGAAGATGAGATCAAATTGA 1128 0.4184 MAVLTPASSCFGAKYKALAPLRILRGLVCLLVLLSTAFIMLVFFGFISAVIVRLFSVRYSRRATSFFFGAWLALWPFLFEKINKTKVVFSGDDVPSRERILLIANHRTEVDWMYLWDLALRKGCIGYIKYILKSSLMRLPVFGWSFHILEFIPVERKWEADESIMRHMLSTFKDPQDPLWLALFPEGTDFTDQKCLRSQKYAAEHGLPVLKNVLLPKTKGFCACLQELRESLTAVYDITIGYKHRCPSFLDNVFGVDPSEVHIHIRRIPLDSIPVSESEMSTWLINRFQLKDRLLSKFQIQGQFPDPATERDLSSVKSILNCMTIVTVTGTCMYYSFSSVWFKLYVSLVCAYLVPATYYNIRPQPILSLLKMRSN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00540 375 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 18 354 - -
Phco9g00540 375 Pfam Acyltransferase C-terminus 254 323 IPR032098 -
Phco9g00540 375 SMART plsc_2 100 214 IPR002123 GO:0016746
Phco9g00540 375 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 29 214 - -
Phco9g00540 375 CDD LPLAT_LCLAT1-like 76 266 - -
Phco9g00540 375 Pfam Acyltransferase 89 243 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00540 Phco-Chr9 3934061 3935841 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00540 9 3934061 3935841 Phco9g00540 9 3934061 3935841 ECH
Phco9g00540 9 3934061 3935841 Phco8g01046 8 10973549 10979186 ECH